Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00853 ATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAGGCCAAAACTACGAAGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG 342 43.27 MIFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7519593 7520472 + Cp4.1LG12g06470.1 Cpe12g00853 478850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00853 113 Pfam Ribosomal protein L44 27 102 IPR000552 GO:0003735|GO:0005840|GO:0006412
Cpe12g00853 113 MobiDBLite consensus disorder prediction 36 64 - -
Cpe12g00853 113 MobiDBLite consensus disorder prediction 36 56 - -
Cpe12g00853 113 ProSitePatterns Ribosomal protein L44e signature. 71 82 IPR000552 GO:0003735|GO:0005840|GO:0006412
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01195 Cpe12g00853 CCT
Cpe12g00853 Cpe17g00713 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00853 Cpe-Chr12:7519593 Cpe17g00713 Cpe-Chr17:5675047 4.70E-71 wgd
Cpe12g00853 Cpe-Chr12:7519593 Cpe02g01558 Cpe-Chr2:13212320 1.14E-71 wgd
Cpe12g00853 Cpe-Chr12:7519593 Cpe03g00837 Cpe-Chr3:5268019 4.70E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00853 K02929 - tcc:18608503 213.386