Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00890 ATGAAAGATACTGGACCTCTGGACTTCAGCGCCGAAAGAGTTCTCGCAAAGGAGTTCCTTGCGAACTTCGCCGATGCAAATGGTGAAGCCAAGTACTTAAACATCCTGCAAGAGGTTGCAAATCGCAGAGTCCGAGCAATTCAAATCGATCTCGAGGATCTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCAAACGTATTACAGAAAACACCCGGCGATATATTGGAATTTTTGCCGATGCTATTGATGAGCTCATGCCGGAGCCAACAGAGGCGTTTGTAGATGATGATCACGACATACTAATGACACAAAGGTCTGATGATGGACCTGATACTAACGATAACCCTGACCCACGCCAAAAAATGCCGCCAGAAATCAAACGATACTTTGAAGTTTACATTAGAGCACCTTCAAAGGGCCGTCCGTTTACCATAAGAGAGGTCAAAGCGTCATATATTGGTCAACTTGTGAGAATATCTGGTATTGTGACACGCTGTTCAGATGTTAAGCCGTTGATGCAGGTGGCAGTTTATACATGCGAAGACTGTGGTTTTGAGATATACCAGGCCAAACTTCAAGAGTTAGCTGAGCATGTTCCGAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCTCCAGGTGATGTTGTTGAACTATCAGGAATTTTTCTGCCCATTCCTTACACGGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCTATGTCAATCACCCATTTCAAGAAAAAATATGAGGAATACGAACTTCGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCTGAGGATGGTGATATTTACAACAAACTGGCACGATCGTTGGCACCTGAAATTTTTGGTCATGAAGATATTAAAAAAGCTTTACTGCTTCTTCTTGTTGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTAATGGGTGATCCTGGTGTTGCAAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGAGTCTACACGACTGGCAAAGGTAGCAGTGGTGTTGGTCTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTGTTAGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATACATGAAGTCATGGAGCAACAGACCGTGAGCATTGCCAAGGCTGGAATCACCACGTCTCTTAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCGGCATGGGGAAGATATGACCTCCGTAGAACTCCTGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTCGATCTTCTTTGGTTGATCCTAGATCGAGCTGACATGGATAATGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCTCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTATATTTCCGCCGCAAGAAGATTGTCTCCTTACGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGTATTCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATATACCACAGTGAGAACTCTACTAAGCATTCTTCGGATATCAGCTGCTCTAGCGAGGCTTAGATTCTCCGAGACTGTGGCCCAAAGTGATGTTGATGAGGCTCTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGATGACCGTCAAAAGTCTGGTCTAGATGCTATCTCAGATATCTATTCAATCTTGCGCGATGAAGCTGCCAGAACTAATAAAATGGATGTGAGCTATGCACACGCCCTTAACTGGATTTCCAGGAAGGGATACAGCGAAGCTCAACTAAAGGAATGTTTGGAGGAGTATGCTGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA 2043 43.95 MKDTGPLDFSAERVLAKEFLANFADANGEAKYLNILQEVANRRVRAIQIDLEDLFNYKDLDEDFLKRITENTRRYIGIFADAIDELMPEPTEAFVDDDHDILMTQRSDDGPDTNDNPDPRQKMPPEIKRYFEVYIRAPSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7737505 7744601 - Cp4.1LG12g06060.1 Cpe12g00890 478887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00890 680 Gene3D - 273 605 IPR027417 -
Cpe12g00890 680 SMART mcm 142 600 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe12g00890 680 Pfam MCM AAA-lid domain 515 598 IPR041562 -
Cpe12g00890 680 SUPERFAMILY Nucleic acid-binding proteins 16 256 IPR012340 -
Cpe12g00890 680 Pfam MCM N-terminal domain 17 135 IPR027925 -
Cpe12g00890 680 PRINTS Mini-chromosome maintenance (MCM) protein family signature 441 453 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe12g00890 680 PRINTS Mini-chromosome maintenance (MCM) protein family signature 417 430 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe12g00890 680 PRINTS Mini-chromosome maintenance (MCM) protein family signature 329 344 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe12g00890 680 PRINTS Mini-chromosome maintenance (MCM) protein family signature 389 403 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe12g00890 680 PRINTS Mini-chromosome maintenance (MCM) protein family signature 468 476 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe12g00890 680 Pfam MCM OB domain 191 235 IPR033762 -
Cpe12g00890 680 Pfam MCM OB domain 146 188 IPR033762 -
Cpe12g00890 680 MobiDBLite consensus disorder prediction 103 124 - -
Cpe12g00890 680 Pfam MCM P-loop domain 276 498 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe12g00890 680 CDD MCM7 291 598 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe12g00890 680 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 39 658 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe12g00890 680 ProSitePatterns MCM family signature. 397 405 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cpe12g00890 680 Gene3D - 12 103 - -
Cpe12g00890 680 ProSiteProfiles MCM family domain profile. 288 494 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe12g00890 680 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 179 190 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe12g00890 680 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 123 135 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe12g00890 680 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 161 172 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe12g00890 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 609 IPR027417 -
Cpe12g00890 680 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 39 658 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe12g00890 680 Gene3D - 144 264 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00890 Cpe-Chr12:7737505 Cpe15g00556 Cpe-Chr15:6397771 2.63E-109 dispersed
Cpe12g00890 Cpe-Chr12:7737505 Cpe17g00747 Cpe-Chr17:5904660 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00890 K02210 - csv:101219064 1284.63