Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cpe12g00890	ATGAAAGATACTGGACCTCTGGACTTCAGCGCCGAAAGAGTTCTCGCAAAGGAGTTCCTTGCGAACTTCGCCGATGCAAATGGTGAAGCCAAGTACTTAAACATCCTGCAAGAGGTTGCAAATCGCAGAGTCCGAGCAATTCAAATCGATCTCGAGGATCTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCAAACGTATTACAGAAAACACCCGGCGATATATTGGAATTTTTGCCGATGCTATTGATGAGCTCATGCCGGAGCCAACAGAGGCGTTTGTAGATGATGATCACGACATACTAATGACACAAAGGTCTGATGATGGACCTGATACTAACGATAACCCTGACCCACGCCAAAAAATGCCGCCAGAAATCAAACGATACTTTGAAGTTTACATTAGAGCACCTTCAAAGGGCCGTCCGTTTACCATAAGAGAGGTCAAAGCGTCATATATTGGTCAACTTGTGAGAATATCTGGTATTGTGACACGCTGTTCAGATGTTAAGCCGTTGATGCAGGTGGCAGTTTATACATGCGAAGACTGTGGTTTTGAGATATACCAGGCCAAACTTCAAGAGTTAGCTGAGCATGTTCCGAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCTCCAGGTGATGTTGTTGAACTATCAGGAATTTTTCTGCCCATTCCTTACACGGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCTATGTCAATCACCCATTTCAAGAAAAAATATGAGGAATACGAACTTCGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCTGAGGATGGTGATATTTACAACAAACTGGCACGATCGTTGGCACCTGAAATTTTTGGTCATGAAGATATTAAAAAAGCTTTACTGCTTCTTCTTGTTGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTAATGGGTGATCCTGGTGTTGCAAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGAGTCTACACGACTGGCAAAGGTAGCAGTGGTGTTGGTCTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTGTTAGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATACATGAAGTCATGGAGCAACAGACCGTGAGCATTGCCAAGGCTGGAATCACCACGTCTCTTAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCGGCATGGGGAAGATATGACCTCCGTAGAACTCCTGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTCGATCTTCTTTGGTTGATCCTAGATCGAGCTGACATGGATAATGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCTCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTATATTTCCGCCGCAAGAAGATTGTCTCCTTACGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGTATTCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATATACCACAGTGAGAACTCTACTAAGCATTCTTCGGATATCAGCTGCTCTAGCGAGGCTTAGATTCTCCGAGACTGTGGCCCAAAGTGATGTTGATGAGGCTCTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGATGACCGTCAAAAGTCTGGTCTAGATGCTATCTCAGATATCTATTCAATCTTGCGCGATGAAGCTGCCAGAACTAATAAAATGGATGTGAGCTATGCACACGCCCTTAACTGGATTTCCAGGAAGGGATACAGCGAAGCTCAACTAAAGGAATGTTTGGAGGAGTATGCTGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA	2043	43.95	MKDTGPLDFSAERVLAKEFLANFADANGEAKYLNILQEVANRRVRAIQIDLEDLFNYKDLDEDFLKRITENTRRYIGIFADAIDELMPEPTEAFVDDDHDILMTQRSDDGPDTNDNPDPRQKMPPEIKRYFEVYIRAPSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA	680

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
12	7737505	7744601	-	Cp4.1LG12g06060.1	Cpe12g00890	478887

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cpe12g00890	680	Gene3D	-	273	605	IPR027417	-
Cpe12g00890	680	SMART	mcm	142	600	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
Cpe12g00890	680	Pfam	MCM AAA-lid domain	515	598	IPR041562	-
Cpe12g00890	680	SUPERFAMILY	Nucleic acid-binding proteins	16	256	IPR012340	-
Cpe12g00890	680	Pfam	MCM N-terminal domain	17	135	IPR027925	-
Cpe12g00890	680	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	441	453	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe12g00890	680	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	417	430	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe12g00890	680	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	329	344	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe12g00890	680	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	389	403	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe12g00890	680	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	468	476	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe12g00890	680	Pfam	MCM OB domain	191	235	IPR033762	-
Cpe12g00890	680	Pfam	MCM OB domain	146	188	IPR033762	-
Cpe12g00890	680	MobiDBLite	consensus disorder prediction	103	124	-	-
Cpe12g00890	680	Pfam	MCM P-loop domain	276	498	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe12g00890	680	CDD	MCM7	291	598	IPR008050	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Cpe12g00890	680	PANTHER	DNA REPLICATION LICENSING FACTOR MCM7	39	658	IPR008050	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Cpe12g00890	680	ProSitePatterns	MCM family signature.	397	405	IPR018525	GO:0003677\|GO:0005524\|GO:0006260
Cpe12g00890	680	Gene3D	-	12	103	-	-
Cpe12g00890	680	ProSiteProfiles	MCM family domain profile.	288	494	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cpe12g00890	680	PRINTS	Mini-chromosome maintenance (MCM) protein 7 signature	179	190	IPR008050	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Cpe12g00890	680	PRINTS	Mini-chromosome maintenance (MCM) protein 7 signature	123	135	IPR008050	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Cpe12g00890	680	PRINTS	Mini-chromosome maintenance (MCM) protein 7 signature	161	172	IPR008050	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Cpe12g00890	680	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	298	609	IPR027417	-
Cpe12g00890	680	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	39	658	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
Cpe12g00890	680	Gene3D	-	144	264	IPR012340	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cpe12g00890	K02210	MCM7, CDC47; DNA replication licensing factor MCM7 [EC:5.6.2.3]	-	csv:101219064	1284.63

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cpe12g00890	Cpe-Chr12:7737505	Cpe15g00556	Cpe-Chr15:6397771	2.63E-109	dispersed
	Cpe12g00890	Cpe-Chr12:7737505	Cpe17g00747	Cpe-Chr17:5904660	0	wgd

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi7g390	.	Blo06g00534	.	Bda10g00656	.	.	Bma10g01097	.	.	Cmo17g01008	.	.	.	.	.	.	.	Bhi09g00842	.	.	.	.	.	.	Cla09g00472	Cam09g0512	Cec09g0509	Cco09g0502	Clacu09g0515	.	Cre09g0492	.	.	.	.	Lsi02g02475	Csa07g01905	.	Cme01g02199	.	.	.	.	Bpe10g00498	.	.	Bma15g00493	.	.	.	.	Cma17g01031	.	Car17g00984	.	Cpe12g00890	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Chy01g01752	.

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Cpe06g01023	.	106	786	Core DNA Replication Machinery Family	AT4G14700	65.0	4.4e-259	891.3
Cpe06g01023	.	73	786	Core DNA Replication Machinery Family	AT4G12620	65.7	1.7e-271	932.6
Cpe07g00469	.	1	276	Core DNA Replication Machinery Family	AT2G37560	68.1	2.7e-109	392.5
Cpe01g01014	.	9	410	Core DNA Replication Machinery Family	AT2G01120	65.8	3.4e-154	542.0
Cpe12g00375	.	3	536	Core DNA Replication Machinery Family	AT4G29910	56.9	1.6e-167	586.6
Cpe11g00701	.	1	226	Core DNA Replication Machinery Family	AT1G26840	73.0	1.5e-89	326.6
Cpe08g00047	.	962	1793	Core DNA Replication Machinery Family	AT1G79150	58.4	2.9e-242	835.5
Cpe15g00894	.	1	368	Core DNA Replication Machinery Family	AT1G79150	52.6	2.1e-102	370.9
Cpe03g00916	.	9	939	Core DNA Replication Machinery Family	AT1G44900	75.2	0.0e+00	1335.9
Cpe08g00006	.	1	966	Core DNA Replication Machinery Family	AT1G44900	73.4	0.0e+00	1331.6
Cpe19g01129	CCT	65	636	Core DNA Replication Machinery Family	AT5G46280	81.5	2.1e-268	921.8
Cpe04g00111	CST	1	845	Core DNA Replication Machinery Family	AT2G16440	74.9	0.0e+00	1179.5
Cpe15g00556	CST	1	845	Core DNA Replication Machinery Family	AT2G16440	76.9	0.0e+00	1159.4
Cpe07g01135	.	1	735	Core DNA Replication Machinery Family	AT2G07690	78.4	0.0e+00	1114.0
Cpe19g01218	.	7	818	Core DNA Replication Machinery Family	AT5G44635	71.6	0.0e+00	1170.6
Cpe17g00747	.	11	722	Core DNA Replication Machinery Family	AT4G02060	85.7	0.0e+00	1218.0
Cpe12g00890	.	8	678	Core DNA Replication Machinery Family	AT4G02060	81.3	0.0e+00	1137.9
Cpe16g00653	.	30	518	Core DNA Replication Machinery Family	AT2G29680	60.4	1.4e-162	570.1
Cpe16g00653	.	30	479	Core DNA Replication Machinery Family	AT1G07270	58.1	2.0e-142	503.1
Cpe12g01089	.	1	593	Core DNA Replication Machinery Family	AT3G25100	76.6	5.2e-257	884.0
Cpe08g01122	.	37	715	Core DNA Replication Machinery Family	AT3G09660	67.0	2.4e-278	955.3
Cpe15g00364	.	16	642	Core DNA Replication Machinery Family	AT2G14050	78.4	2.3e-287	984.9
Cpe16g00316	.	1	437	Core DNA Replication Machinery Family	AT2G20980	51.3	2.6e-111	399.4
Cpe06g00607	CCT	7	893	Core DNA Replication Machinery Family	AT1G77320	50.1	5.9e-237	818.1
Cpe17g00581	.	1	200	Core DNA Replication Machinery Family	AT1G80190	66.8	7.5e-75	277.3
Cpe19g00178	.	1	145	Core DNA Replication Machinery Family	AT3G12530	73.1	1.2e-61	233.0
Cpe01g02514	.	8	177	Core DNA Replication Machinery Family	AT1G19080	64.1	1.7e-57	219.5
Cpe01g02514	.	8	177	Core DNA Replication Machinery Family	AT3G55490	64.1	1.7e-57	219.5
Cpe03g01740	.	15	164	Core DNA Replication Machinery Family	AT5G49010	66.7	5.0e-52	201.4
Cpe05g01165	.	1	1529	Core DNA Replication Machinery Family	AT5G67100	59.5	0.0e+00	1731.1
Cpe09g00571	.	2	625	Core DNA Replication Machinery Family	AT1G67630	63.5	1.3e-223	773.1
Cpe17g01067	.	1	359	Core DNA Replication Machinery Family	AT1G67320	53.3	1.8e-130	463.4
Cpe06g00974	.	1	483	Core DNA Replication Machinery Family	AT5G41880	60.2	1.7e-172	602.8
Cpe19g00507	.	47	1084	Core DNA Replication Machinery Family	AT5G63960	80.4	0.0e+00	1696.4
Cpe03g00370	.	15	431	Core DNA Replication Machinery Family	AT2G42120	73.1	3.6e-191	664.8
Cpe17g01067	.	1	359	Core DNA Replication Machinery Family	AT1G67320	53.3	1.8e-130	463.4
Cpe05g00419	.	1	2115	Core DNA Replication Machinery Family	AT1G08260	70.1	0.0e+00	2947.9
Cpe05g00419	.	9	2221	Core DNA Replication Machinery Family	AT2G27120	67.0	0.0e+00	2918.3
Cpe02g01094	.	7	502	Core DNA Replication Machinery Family	AT5G22110	69.0	2.1e-195	679.1
Cpe05g00456	.	1	929	Core DNA Replication Machinery Family	AT5G22010	62.6	3.9e-304	1041.2
Cpe14g00835	.	1	333	Core DNA Replication Machinery Family	AT1G63160	89.5	3.8e-172	601.3
Cpe10g01069	.	11	275	Core DNA Replication Machinery Family	AT5G27740	65.4	7.0e-92	334.7
Cpe02g00567	.	3	323	Core DNA Replication Machinery Family	AT1G21690	80.7	3.3e-144	508.4
Cpe01g02062	.	1	363	Core DNA Replication Machinery Family	AT1G77470	73.9	2.6e-150	528.9
Cpe13g00630	.	1	455	Core DNA Replication Machinery Family	AT1G77470	62.9	2.3e-146	515.8
Cpe11g01184	.	34	626	Core DNA Replication Machinery Family	AT2G06510	69.0	2.3e-252	868.6
Cpe11g01188	.	26	618	Core DNA Replication Machinery Family	AT2G06510	69.0	2.3e-252	868.6
Cpe08g00899	.	30	697	Core DNA Replication Machinery Family	AT2G06510	52.1	1.1e-201	700.3
Cpe14g01003	.	34	685	Core DNA Replication Machinery Family	AT2G06510	52.6	1.0e-199	693.7
Cpe04g01458	.	1	622	Core DNA Replication Machinery Family	AT5G08020	67.9	3.5e-245	844.7
Cpe08g00899	.	6	804	Core DNA Replication Machinery Family	AT5G45400	51.7	7.0e-231	797.7
Cpe14g01003	.	10	784	Core DNA Replication Machinery Family	AT5G45400	51.6	4.8e-224	775.0
Cpe04g01458	.	1	617	Core DNA Replication Machinery Family	AT5G61000	65.6	6.7e-239	823.9
Cpe08g00899	.	1	818	Core DNA Replication Machinery Family	AT4G19130	53.3	4.9e-231	798.1
Cpe14g01003	.	5	771	Core DNA Replication Machinery Family	AT4G19130	54.8	8.7e-228	787.3
Cpe02g00418	.	1	252	Core DNA Replication Machinery Family	AT2G24490	50.2	4.2e-68	255.4
Cpe04g00203	.	1	402	Core DNA Replication Machinery Family	AT5G26680	80.7	5.5e-181	630.9
Cpe03g01241	.	1	297	Core DNA Replication Machinery Family	AT2G25100	66.7	1.0e-114	410.2
Cpe16g00505	.	44	785	Core DNA Replication Machinery Family	AT1G08130	66.3	5.4e-278	954.1
Cpe16g00505	.	204	785	Core DNA Replication Machinery Family	AT1G49250	66.6	3.6e-227	785.0

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0009694	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	2	1	1	2	1	1	1	1	1	1	1	1	1	1	1	33

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Cpe12g00890	Cpe_Chr12	FPKM	4.740335	5.353114	7.033328	7.075241	7.563643	8.144863	8.480928	8.558835	8.679474	8.495812