Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00911 ATGGCGACGAGGAATCGAACTGCACAGTTTAGAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCGCCTTTATCTTCCTCGGCAGCTGGTTCGAGCGGACCGGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGCTCTTCAGATTACGCTCCTCTTAGCACAGAAGATCCAGGACCTTCGAGCAGTGATGCATTGATGGTGGGTCTGCCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACTGTTAATATACACCAAATTCGTAGGAAGATGGCAGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATCAGAATACGATTGAGGCGCTTACGCAAGAAATTACCAATCTTTTGAAAGCCTCTGAGAAGAGGTTGAAGAAAATTTCTAGTACTGGGTCTTCAGAGGATATTAGCATCAGAAAAAATGTACAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCAATGGATCTTCGTAGAAGACAGTCAATGTATCTGAAACATCTGCAGCAGCAAAAGGAGGGGCATGATGGAATTGATTTGGAGATAAATTTGAATGGAAGCAGAACTCTACAGGATGATGACCGATATGATGAATTTGGAACCAATGAACACCAAACGATGACATTTGGAATGGATGCGCAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTGAAGTCAGTGAATGAACTCGCCCAAATCATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGCTTCAGTTGAAGAGGGCTATAAGCAGCTTCAAAAGGTTCTCTCTCTTTCAAAGATCACTGTCATTTGCAGAGAAGAGTCAGAAGAATGGAGGAATGGTGAAGTGTGCAACGGTGCTTGTTATTATGTGTTTCATAATGCTGGTTCTGTTGATACTGAAGGAGATAATTATGTAACAAATGTTGCCCTTTGGCTTGTTGCTGATAAGGATTTTGACAACTGCATGCGGCTGGTAAGCTCTAAGCAGGTGCCGTTCCTTTCGTGTATTATTCTCAGAGTCTCGAATGTGTCATTGTTGAAATGA 1128 43.09 MATRNRTAQFRRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSDYAPLSTEDPGPSSSDALMVGLPPAWVDDSEEITVNIHQIRRKMAELVKAHSKALMPSFADGKEDQNTIEALTQEITNLLKASEKRLKKISSTGSSEDISIRKNVQRSLATELQNLSMDLRRRQSMYLKHLQQQKEGHDGIDLEINLNGSRTLQDDDRYDEFGTNEHQTMTFGMDAQHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGYKQLQKVLSLSKITVICREESEEWRNGEVCNGACYYVFHNAGSVDTEGDNYVTNVALWLVADKDFDNCMRLVSSKQVPFLSCIILRVSNVSLLK 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7883999 7887646 - Cp4.1LG12g05880.1 Cpe12g00911 478908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00911 375 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 226 288 IPR000727 -
Cpe12g00911 375 SMART SynN_4 67 182 IPR006011 GO:0016020
Cpe12g00911 375 SMART tSNARE_6 221 288 IPR000727 -
Cpe12g00911 375 CDD SNARE_syntaxin16 229 287 - -
Cpe12g00911 375 MobiDBLite consensus disorder prediction 1 32 - -
Cpe12g00911 375 ProSitePatterns Syntaxin / epimorphin family signature. 232 271 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe12g00911 375 SUPERFAMILY t-snare proteins 72 281 IPR010989 GO:0016020|GO:0016192
Cpe12g00911 375 Gene3D - 73 280 - -
Cpe12g00911 375 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 318 - -
Cpe12g00911 375 PANTHER SYNTAXIN 1 318 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00878 Cpe-Chr7:7899543 Cpe12g00911 Cpe-Chr12:7883999 2.15E-115 dispersed
Cpe12g00911 Cpe-Chr12:7883999 Cpe11g00890 Cpe-Chr11:7181930 4.03E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00911 K08489 - csv:101204192 491.5