Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00913 ATGGCTACCAATTCTCATGCCCCTACTCCGAGAGGTCTTCTCTGTAATGCGGGAGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACGTTTGTGTGCCCTTTAGATGTTATCAAGACCAGATTTCAGGTTCATGGACTGCCAAACATCGGGAAAGGGAGTCTTATAGTTGGTAGTCTGCAACAAATTTTTCATAAGGAGGGGCTACGTGGAATGTATAGAGGACTCGCACCGACCGTGCTTGCATTGCTTCCTAACTGGGCTGTCTATTTCACAATCTATGGGCAGCTCAAAAGCTTTCTTCGTTCGGATGTTGAAAATCATCAGCTTTCAATAGGTGCTAATATGATGGCTGCTTCTGGAGCTGGAGCTGCTACAACTATTGCAACGAATCCTCTATGGGTTGTTAAGACCAGGCTTCAGACGCAGGGAATGAAATCTGGTGTGCTACCATATAGAAATACAGTGTCTGCCTTGAGGAGAATAGCCTCTGAAGAAGGCATTCGTGGATTGTACAGTGGTCTTGTTCCTGCTTTGGCCGGTGTAAGTCACGTCGCCATACAGTTTCCAACATACGAAAAAATAAAAAGTTATTTGGCTAGAAGAGACAATACGACGACGGACAAACTCAGCGCACGTGATGTCGCGGTAGCCTCATCTGTCTCCAAGATATTTGCTTCCACATTGACTTATCCACATGAGGTTGTACGTTCCAGGCTTCAGGAACAAGGGTTTCACTCTGAGAAGCGTTATTCTGGCGTAACCGATTGCGTAAAGAAAGTATTTCAGCAAGATGGACTCCCCGGCTTCTATCGAGGGTGCGCAACCAACCTTATCAGGACGACCCCGGCTGCTGCCATCACATTTACCAGCTTTGAAATGATTCACCGCTTTCTTGTCAACTTATTTCCTCCTGATCCACATCCACACACATTATGA 936 46.58 MATNSHAPTPRGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLQQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTIYGQLKSFLRSDVENHQLSIGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALRRIASEEGIRGLYSGLVPALAGVSHVAIQFPTYEKIKSYLARRDNTTTDKLSARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVTDCVKKVFQQDGLPGFYRGCATNLIRTTPAAAITFTSFEMIHRFLVNLFPPDPHPHTL 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7892461 7896296 + Cp4.1LG12g05980.1 Cpe12g00913 478910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00913 311 Pfam Mitochondrial carrier protein 108 200 IPR018108 -
Cpe12g00913 311 Pfam Mitochondrial carrier protein 215 299 IPR018108 -
Cpe12g00913 311 Pfam Mitochondrial carrier protein 15 102 IPR018108 -
Cpe12g00913 311 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 310 - -
Cpe12g00913 311 SUPERFAMILY Mitochondrial carrier 13 293 IPR023395 -
Cpe12g00913 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 197 IPR018108 -
Cpe12g00913 311 Gene3D Mitochondrial carrier domain 1 105 IPR023395 -
Cpe12g00913 311 Gene3D Mitochondrial carrier domain 106 301 IPR023395 -
Cpe12g00913 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 297 IPR018108 -
Cpe12g00913 311 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 310 IPR044712 GO:0006862|GO:0055085
Cpe12g00913 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Cpe12g00913 311 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Cpe12g00913 311 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Cpe12g00913 311 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085
Cpe12g00913 311 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085
Cpe12g00913 311 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00913 Cpe17g00770 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00641 Cpe-Chr10:3690407 Cpe12g00913 Cpe-Chr12:7892461 1.86E-39 dispersed
Cpe12g00913 Cpe-Chr12:7892461 Cpe10g00914 Cpe-Chr10:5103134 2.27E-09 dispersed
Cpe13g00396 Cpe-Chr13:4303424 Cpe12g00913 Cpe-Chr12:7892461 9.12E-120 transposed
Cpe12g00913 Cpe-Chr12:7892461 Cpe17g00770 Cpe-Chr17:6061544 9.38E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00913 K15115 - csv:101204681 570.466