Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00955 ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGTGGCGGCGGCGGAGTTGGTGGTAGTACCGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCTGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCTACGCTTGGGTTCGACGATTATGCCGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATACTCATGATGCATGA 471 47.77 MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNTHDA 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8091978 8092448 - Cp4.1LG12g05460.1 Cpe12g00955 478952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00955 156 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cpe12g00955 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Cpe12g00955 156 SUPERFAMILY Histone-fold 48 149 IPR009072 GO:0046982
Cpe12g00955 156 Gene3D Histone, subunit A 43 155 IPR009072 GO:0046982
Cpe12g00955 156 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cpe12g00955 156 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cpe12g00955 156 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Cpe12g00955 156 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 36 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cpe12g00955 156 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 36 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00930 Cpe-Chr11:7853417 Cpe12g00955 Cpe-Chr12:8091978 1.97E-41 dispersed
Cpe12g00955 Cpe-Chr12:8091978 Cpe16g00379 Cpe-Chr16:5421766 2.04E-51 dispersed
Cpe12g00955 Cpe-Chr12:8091978 Cpe08g00829 Cpe-Chr8:6614923 4.40E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50353 PF00808 CBFD_NFYB_HMF 6.60E-27 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00955 K08065 - csv:101204763 265.388