Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe12g00956 | ATGTGTACTGAAGAGCATGGCAACCTGTCTTCCCCCAATCGCGTGGATCATCAAGAACTTGAACAAAACAATCAGTATCACCTTCTTGATTACTTCCGACAAAGTGTTACGAAGAAGTGTAATCGTCCCGGTAATCTAGATGCTGAAATTGTTGCATTATCACCTACAACCCTAATGACTACAAATAGGTTTGTGTGTGAGCTTTGCAACAAGGGGTTTCAAAGGGATCAAAACCTTCAATTGCATAGGAGAGGCCACAACCTTCCATGGAAATCCCGACAAAGAATCGACGTTGAAGTCAAGAAAAGGGTCTACGTCTGCCTCAAACCGATGGGCGTTCCTCACAACCCAACACAAGCTCTCGGAGATCTTACCGGAATTAAGAAGCGTTTCGGAAGAAAACGTGTGGAGAAAAAATGGAAATGTGAGAAATGTTTCAAGAAATGTGCAGTTCGGTAA | 459 | 43.14 | MCTEEHGNLSSPNRVDHQELEQNNQYHLLDYFRQSVTKKCNRPGNLDAEIVALSPTTLMTTNRFVCELCNKGFQRDQNLQLHRRGHNLPWKSRQRIDVEVKKRVYVCLKPMGVPHNPTQALGDLTGIKKRFGRKRVEKKWKCEKCFKKCAVR | 152 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8097758 | 8098707 | + | Cp4.1LG12g05600.1 | Cpe12g00956 | 478953 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe12g00956 | 152 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 66 | 86 | IPR013087 | - | |
Cpe12g00956 | 152 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 8 | 151 | - | - | |
Cpe12g00956 | 152 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 64 | 86 | IPR013087 | - | |
Cpe12g00956 | 152 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 8 | 151 | - | - | |
Cpe12g00956 | 152 | Pfam | Zinc-finger double-stranded RNA-binding | 64 | 86 | IPR022755 | - | |
Cpe12g00956 | 152 | SUPERFAMILY | beta-beta-alpha zinc fingers | 62 | 87 | IPR036236 | - | |
Cpe12g00956 | 152 | Gene3D | Classic Zinc Finger | 61 | 152 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe12g00956 | Cpe-Chr12:8097758 | Cpe10g00598 | Cpe-Chr10:3500010 | 1.01E-52 | dispersed | |
Cpe12g00956 | Cpe-Chr12:8097758 | Cpe02g00139 | Cpe-Chr2:691915 | 4.50E-54 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50354 | PF12171 | zf-C2H2_jaz | 2.20E-05 | CL0361 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe12g00956 | - | - | bhj:120069139 | 193.741 |