Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00956 ATGTGTACTGAAGAGCATGGCAACCTGTCTTCCCCCAATCGCGTGGATCATCAAGAACTTGAACAAAACAATCAGTATCACCTTCTTGATTACTTCCGACAAAGTGTTACGAAGAAGTGTAATCGTCCCGGTAATCTAGATGCTGAAATTGTTGCATTATCACCTACAACCCTAATGACTACAAATAGGTTTGTGTGTGAGCTTTGCAACAAGGGGTTTCAAAGGGATCAAAACCTTCAATTGCATAGGAGAGGCCACAACCTTCCATGGAAATCCCGACAAAGAATCGACGTTGAAGTCAAGAAAAGGGTCTACGTCTGCCTCAAACCGATGGGCGTTCCTCACAACCCAACACAAGCTCTCGGAGATCTTACCGGAATTAAGAAGCGTTTCGGAAGAAAACGTGTGGAGAAAAAATGGAAATGTGAGAAATGTTTCAAGAAATGTGCAGTTCGGTAA 459 43.14 MCTEEHGNLSSPNRVDHQELEQNNQYHLLDYFRQSVTKKCNRPGNLDAEIVALSPTTLMTTNRFVCELCNKGFQRDQNLQLHRRGHNLPWKSRQRIDVEVKKRVYVCLKPMGVPHNPTQALGDLTGIKKRFGRKRVEKKWKCEKCFKKCAVR 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8097758 8098707 + Cp4.1LG12g05600.1 Cpe12g00956 478953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00956 152 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Cpe12g00956 152 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 151 - -
Cpe12g00956 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Cpe12g00956 152 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 8 151 - -
Cpe12g00956 152 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Cpe12g00956 152 SUPERFAMILY beta-beta-alpha zinc fingers 62 87 IPR036236 -
Cpe12g00956 152 Gene3D Classic Zinc Finger 61 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00956 Cpe-Chr12:8097758 Cpe10g00598 Cpe-Chr10:3500010 1.01E-52 dispersed
Cpe12g00956 Cpe-Chr12:8097758 Cpe02g00139 Cpe-Chr2:691915 4.50E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50354 PF12171 zf-C2H2_jaz 2.20E-05 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00956 - - bhj:120069139 193.741