Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00971 ATGGATTCATTTTTGGGAAACACCGTGATGAAGTTGGCTTTGAAATCAGACCCTGAAGAGCATCGCGTTGCATTGTTTGTATTACTTCTTTGTGCTTGTATTGTAATTGGGCATCTTCTTGAGAAAAGTCGTTGGATAAATGAATCAGTCACTGCTATTTTCATTGGTCTTTTCACTGGAACTCTCATCTTATTAACAACCAAAGGCAGAAACTCACGTATCCTAGTGTTTAGTGAAGAGCTTTTCTTCATTTATGTTCTTCCACCCATAATTTTTAATGCTGGGTTTCAGGTGAAAAAGAAACAGTTCTTTCGGAACTTTCTAATGATCATGTTGTTTGGGGCTGTTGGTACTGCGATCTCATTTTTCATCATATCACTTGGTTCACTACATATATTCAAGAAATTGGATATTGGCTTCTTAGATGTGGGTGATTATTTTGCCCTAGGAGCAATCTTATCAGCCACAGATAGTGTTTGCACTTTGCAGGTGCTTAATCAGGACGAGACTCCTTTACTGTATAGTCTAGTCTTTGGTGAAGGTGTGGTTAATGATGCTACTTCTGTCGTGCTTTTCAAAGCAATCCAGAGATTCGACCTCTCTCACATCACCTCATCCAATGCCATTCAGCTTCTTGGAAACTTTTCCTATTTATTTTTGATGAGCACCTTGCTGGGAGTGATAGTTGGGCTGTCCAGTGCATACATCATAAAGAAACTGTACTTTGGCAGGCAAGCACTTTCTTTCCTCCCTCTGTTCATTAAGTTCATTTCTTTTGCTAAACGAATTCCAATGCACTCAACTGATCGGGAGGTCGCTTTGATGATTTTAATGCCTTACCTTTCGTATATGACTGCTGAATTGTGCAATCTTAGTGGTATTCTTACCATGTTCTTTTGTGGGATTGTCATGTCCCATTACACTTGGCATAATGTGACTGAAAGTTCAAGAGTGACCACCAAGCATACTTTTGCAACGCTCTCATTTGTTTCTGAGACTTTCATCTTCTTATACGTTGGCATGGATGCCTTGGATATTGAGAAGTGGAAAATTGTTGGCCGAAGGCCTTGGACCTCGGCTGGTGTAAGTCTAATACTGCTTGGTTTAGTCCTTGCTGCAAGGGCAGCTTTTGTATTTCCGCTCTCGTTTATATCGAACTTGACTAGAAAGTCTCAGAGCGACAGAATCGGGTTTAAGCAGCAGGTTACAATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTCTCTGTAGCCCTTGCTTATAATCAGTTTACAAGGTCAGGGTACACACAGCTGCAAGAGAATGCGATTATGATTACTAGCACGATCACGATTGTTCTCGTCACTAATGTGGTATTTGGACTCTTAACTAAACCCATTGTAAGGTACATGCTTTCACTGCATGATACACCAATAGATGCCACAATTGTAGCAGCAGCAGATTCTCCAGTTAAGTCGCTGACCGACGTTCTTTTGTCCGGTGGTGAAGATGTCGAAGCCGATGTTCGAGAATCGAACATTCCCCGTCCTACCAGCTTACGTATGCTGTTAACAACTCCAACTCATTCCGTCCATTACTATTGGCGTATGTTCGATGATCGATTCATGCGTCCTGTCTTTGGTGGAAGAGGCTTCGTACCTTTCATCCCTGGCTCACCAACTGAAAAATTGGGCTCTTGGCTTCATGGATTCAAGTCCATTCGCGTTTCTGTCGCAATTGGGGCTGAAAGCAGACCCGTTTCAGGTGAAGAAGAAACAGCTCTTCGCAACTTTCTGGCAATCATATTGTTTGGTGCTTTTGGAAGTGTGATATCATTCTTCATCATATCAGTAGGTTCTTAA 1839 42.03 MDSFLGNTVMKLALKSDPEEHRVALFVLLLCACIVIGHLLEKSRWINESVTAIFIGLFTGTLILLTTKGRNSRILVFSEELFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAVGTAISFFIISLGSLHIFKKLDIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQRFDLSHITSSNAIQLLGNFSYLFLMSTLLGVIVGLSSAYIIKKLYFGRQALSFLPLFIKFISFAKRIPMHSTDREVALMILMPYLSYMTAELCNLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVSETFIFLYVGMDALDIEKWKIVGRRPWTSAGVSLILLGLVLAARAAFVFPLSFISNLTRKSQSDRIGFKQQVTIWWAGLMRGAVSVALAYNQFTRSGYTQLQENAIMITSTITIVLVTNVVFGLLTKPIVRYMLSLHDTPIDATIVAAADSPVKSLTDVLLSGGEDVEADVRESNIPRPTSLRMLLTTPTHSVHYYWRMFDDRFMRPVFGGRGFVPFIPGSPTEKLGSWLHGFKSIRVSVAIGAESRPVSGEEETALRNFLAIILFGAFGSVISFFIISVGS 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8191682 8201059 + Cp4.1LG12g05410.1 Cpe12g00971 478968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00971 612 Gene3D - 143 194 - -
Cpe12g00971 612 PANTHER SODIUM/HYDROGEN EXCHANGER 9 555 - -
Cpe12g00971 612 PRINTS Na+/H+ exchanger signature 150 160 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe12g00971 612 PRINTS Na+/H+ exchanger signature 95 109 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe12g00971 612 PRINTS Na+/H+ exchanger signature 110 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe12g00971 612 PRINTS Na+/H+ exchanger signature 81 92 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe12g00971 612 ProSiteProfiles cAMP/cGMP binding motif profile. 121 153 IPR000595 -
Cpe12g00971 612 PANTHER SODIUM/HYDROGEN EXCHANGER 9 555 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cpe12g00971 612 Pfam Sodium/hydrogen exchanger family 26 461 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00237 Cpe-Chr4:2910144 Cpe12g00971 Cpe-Chr12:8191682 0 dispersed
Cpe11g00927 Cpe-Chr11:7755738 Cpe12g00971 Cpe-Chr12:8191682 0 dispersed
Cpe12g00971 Cpe-Chr12:8191682 Cpe17g00096 Cpe-Chr17:590904 0 dispersed
Cpe02g00800 Cpe-Chr2:5117043 Cpe12g00971 Cpe-Chr12:8191682 5.85E-174 transposed
Cpe12g00971 Cpe-Chr12:8191682 Cpe17g00001 Cpe-Chr17:13054 8.98E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00971 - K14724 csv:101206431 924.85