Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g01046 ATGAATCTTTTATTCGAACATCGGGGGGGAATTTGTATGGTTGATTTATACGCGATTGTTGCAGAGATGAATCCTCTGTTTTCGGTTAAGGAAGAGTTTCCTGGATCGAATTCGTTGGGGACCGACAGAGAGCGATTGGCTATGGCTCCTCCGATTCCGATGGAGGGCCTTCACGATGCCGGTCCACCGCCGTTTCTGACGAAGACGTTTGAAATCGTTGATGATTTTAATACCGATCATGTGATTTCTTGGAGCTTTGGGGGAAATAGCTTCGTCGTTTGGGATCCCCATTGCTTCTCCACTGAATTGCTTCCCAGATTCTTTAAGCATAATAACTTTTCCAGTTTCGTTCGGCAGCTTAATACTTACGGCTTTAGAAAGATAGATCCAGATAGATGGGAGTTCGCAAATGAGGGATTTCTCAGAGGCCAAAAGCATCTTCTTAAGAACATAAAGAGGAGGAGGGCAACTTATCACCACCACCAAACTCCCCAATCACAAGCAGCTAGTGGAGCTTGTGTAGAGGTCGGTCAATTTGGTGTAGATGCAGAAATGGATCGTTTAAAACGTGACAAGCAAGTGCTAATGATGGAGTTAGTGAAGCTAAGGCAAGAGCAACAGAACACGAGAGCTTATCTTCAAGCAATGGAGCAAAGGCTTAGAGGAACTGAAATTAAGCAGAGACAAATGATGAATTTCTTAGCAAGAGCTATGCAAAACCCATCGTTCATTCAGCAATTACTCCAGCAGAAGGAGAAGAGGAAGGTGCTTGAAGAAGCCATAACTAGGAAAAGAAGAAGGCCTATTCAACAAGGTGGGAAACAGAGCGGAGGTGGTAGTGGGAGATTCTTGGGTGAAGGTTCAAGCACCATCAAGATTGAGCCTCTTGAACCTGAAGAATATGGGTTTGGGATTACAGAGCTAGAAGCACTTGCCTTGGAGATGCAGGGGCTTGGCAGGGCAAGACATGAAGAGGAGGAGGAAGAAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGATCATTTACCTCCACCAGCGGATGGAGATAAAGTACTTGATGAAGGGTTTTGGGAAGAATTGTTCAGCGAAAGGTTGGAGGTAGCCAGTGGTGACGATGAAGATGTGAAAGTTCTGGCTGATCGGTTGGGCTATTTGGGCTCAAACCCACGATAG 1191 45.09 MNLLFEHRGGICMVDLYAIVAEMNPLFSVKEEFPGSNSLGTDRERLAMAPPIPMEGLHDAGPPPFLTKTFEIVDDFNTDHVISWSFGGNSFVVWDPHCFSTELLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGQKHLLKNIKRRRATYHHHQTPQSQAASGACVEVGQFGVDAEMDRLKRDKQVLMMELVKLRQEQQNTRAYLQAMEQRLRGTEIKQRQMMNFLARAMQNPSFIQQLLQQKEKRKVLEEAITRKRRRPIQQGGKQSGGGSGRFLGEGSSTIKIEPLEPEEYGFGITELEALALEMQGLGRARHEEEEEEEEEDEEEEEEEEEEEEDHLPPPADGDKVLDEGFWEELFSERLEVASGDDEDVKVLADRLGYLGSNPR 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8701516 8705310 + Cp4.1LG12g11490.1 Cpe12g01046 479043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g01046 396 PRINTS Heat shock factor (HSF) domain signature 65 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cpe12g01046 396 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cpe12g01046 396 PRINTS Heat shock factor (HSF) domain signature 116 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cpe12g01046 396 Coils Coil 247 267 - -
Cpe12g01046 396 MobiDBLite consensus disorder prediction 318 361 - -
Cpe12g01046 396 Coils Coil 185 219 - -
Cpe12g01046 396 MobiDBLite consensus disorder prediction 325 348 - -
Cpe12g01046 396 Pfam HSF-type DNA-binding 65 154 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cpe12g01046 396 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 32 373 IPR027725 -
Cpe12g01046 396 Gene3D - 58 155 IPR036388 -
Cpe12g01046 396 MobiDBLite consensus disorder prediction 261 288 - -
Cpe12g01046 396 ProSitePatterns HSF-type DNA-binding domain signature. 104 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cpe12g01046 396 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 32 373 - -
Cpe12g01046 396 SMART hsfneu3 61 154 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cpe12g01046 396 Coils Coil 308 348 - -
Cpe12g01046 396 SUPERFAMILY Winged helix DNA-binding domain 61 154 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g01046 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101208010 600.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00562 Cpe-Chr7:3733418 Cpe12g01046 Cpe-Chr12:8701516 5.99E-91 dispersed
Cpe08g00869 Cpe-Chr8:6864133 Cpe12g01046 Cpe-Chr12:8701516 3.37E-87 dispersed
Cpe11g00071 Cpe-Chr11:386896 Cpe12g01046 Cpe-Chr12:8701516 3.86E-91 dispersed
Cpe12g01046 Cpe-Chr12:8701516 Cpe14g00974 Cpe-Chr14:8243941 3.12E-65 dispersed
Cpe12g01046 Cpe-Chr12:8701516 Cpe15g00018 Cpe-Chr15:133916 3.74E-143 wgd
Cpe12g01046 Cpe-Chr12:8701516 Cpe03g01464 Cpe-Chr3:11644910 1.26E-102 wgd
Cpe12g01046 Cpe-Chr12:8701516 Cpe08g00284 Cpe-Chr8:1825673 2.75E-95 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe12g01046 . 27 250 HSF AT4G17750 53.5 3.1e-61 233.4
Cpe11g00071 . 18 243 HSF AT4G17750 51.4 3.7e-59 226.5
Cpe03g01464 . 53 258 HSF AT4G17750 55.8 4.1e-58 223.0
Cpe15g00018 . 166 395 HSF AT4G17750 50.4 5.4e-58 222.6
Cpe20g00480 CST 13 192 HSF AT4G17750 50.3 5.8e-44 176.0
Cpe05g01537 . 12 110 HSF AT4G17750 71.7 2.3e-40 164.1
Cpe11g00146 CCT,CST 20 118 HSF AT4G17750 71.7 7.3e-39 159.1
Cpe02g00187 CCT,CST 20 118 HSF AT4G17750 69.7 3.6e-38 156.8
Cpe06g00166 CCT 21 118 HSF AT4G17750 69.4 1.4e-37 154.8
Cpe12g01046 . 63 250 HSF AT5G16820 61.3 1.2e-59 228.0
Cpe15g00018 . 167 374 HSF AT5G16820 54.2 4.0e-58 223.0
Cpe07g00562 . 41 224 HSF AT5G16820 57.3 3.8e-56 216.5
Cpe03g01464 . 77 281 HSF AT5G16820 53.3 7.1e-55 212.2
Cpe11g00071 . 43 227 HSF AT5G16820 55.2 1.2e-54 211.5
Cpe19g01087 CST 10 192 HSF AT5G16820 51.9 5.6e-44 176.0
Cpe05g01537 . 13 112 HSF AT5G16820 78.0 8.4e-40 162.2
Cpe08g00869 . 13 516 HSF AT1G32330 52.1 2.7e-115 412.9
Cpe12g01046 . 51 250 HSF AT1G32330 55.8 1.5e-60 231.1
Cpe07g00562 . 1 221 HSF AT1G32330 50.2 3.0e-53 206.8
Cpe05g01537 . 11 106 HSF AT1G32330 76.0 2.2e-40 164.1
Cpe11g00146 CCT,CST 20 117 HSF AT1G32330 71.4 4.6e-38 156.4
Cpe02g00187 CCT,CST 22 117 HSF AT1G32330 71.9 1.8e-37 154.5
Cpe12g01046 . 63 250 HSF AT3G02990 62.1 1.2e-59 228.0
Cpe15g00018 . 167 390 HSF AT3G02990 50.9 7.9e-59 225.3
Cpe03g01464 . 77 280 HSF AT3G02990 54.3 3.0e-58 223.4
Cpe11g00071 . 43 243 HSF AT3G02990 52.7 3.7e-56 216.5
Cpe07g00562 . 41 217 HSF AT3G02990 56.0 1.5e-54 211.1
Cpe05g01537 . 13 106 HSF AT3G02990 77.7 8.2e-40 162.2
Cpe12g01046 . 51 246 HSF AT2G26150 61.2 5.4e-65 245.4
Cpe03g01464 . 65 277 HSF AT2G26150 54.4 3.0e-63 239.6
Cpe08g00869 . 8 243 HSF AT2G26150 56.1 2.8e-61 233.0
Cpe15g00018 . 150 359 HSF AT2G26150 50.7 4.4e-59 225.7
Cpe05g01537 . 2 111 HSF AT4G18880 67.3 4.4e-42 169.5
Cpe06g00166 CCT 24 128 HSF AT4G18880 62.4 2.1e-36 150.6
Cpe08g00417 CST 4 467 HSF AT4G13980 51.2 8.2e-117 417.9
Cpe03g01613 CST 6 445 HSF AT4G13980 52.8 6.5e-114 408.3
Cpe05g01537 . 4 111 HSF AT4G13980 65.7 2.6e-38 157.1
Cpe03g01464 . 65 257 HSF AT5G43840 53.4 1.7e-53 206.8
Cpe12g01046 . 51 247 HSF AT5G43840 51.8 1.3e-51 200.7
Cpe07g00562 . 29 220 HSF AT5G43840 53.1 3.8e-48 189.1
Cpe15g00018 . 155 470 HSF AT3G22830 52.2 4.1e-88 322.4
Cpe03g01464 . 38 286 HSF AT3G22830 58.2 5.7e-82 302.0
Cpe11g00071 . 31 241 HSF AT3G22830 55.9 4.9e-65 245.7
Cpe08g00869 . 9 242 HSF AT3G22830 55.1 6.6e-62 235.3
Cpe05g01537 . 5 105 HSF AT3G22830 69.3 4.3e-37 152.9
Cpe03g01464 . 63 277 HSF AT3G51910 57.9 5.2e-63 238.4
Cpe07g00562 . 29 249 HSF AT3G51910 51.3 9.9e-54 207.6
Cpe11g00071 . 31 248 HSF AT3G51910 51.8 9.9e-54 207.6
Cpe03g01464 . 63 266 HSF AT3G63350 52.6 2.5e-52 203.0
Cpe11g00071 . 20 231 HSF AT3G63350 50.9 6.2e-51 198.4
Cpe07g00562 . 18 228 HSF AT3G63350 50.9 2.6e-49 193.0
Cpe12g01046 . 64 252 HSF AT1G67970 51.1 1.0e-45 181.4
Cpe10g00435 CCT 2 302 HSF AT4G36990 51.7 1.1e-68 257.3
Cpe11g00146 CCT,CST 17 115 HSF AT5G62020 66.7 2.9e-38 156.4
Cpe05g00312 . 16 287 HSF AT4G11660 53.7 1.8e-74 276.9
Cpe13g00172 CCT,CST 16 343 HSF AT4G11660 51.3 2.2e-72 270.0
Cpe02g00187 CCT,CST 16 119 HSF AT4G11660 74.0 8.9e-45 178.3
Cpe06g00166 CCT 16 121 HSF AT4G11660 72.6 1.5e-44 177.6
Cpe11g00146 CCT,CST 16 121 HSF AT4G11660 71.7 2.0e-44 177.2
Cpe10g00435 CCT 2 108 HSF AT4G11660 71.0 4.1e-42 169.5
Cpe19g00618 CCT 5 102 HSF AT4G11660 69.4 2.8e-38 156.8
Cpe14g00974 . 82 175 HSF AT4G11660 69.1 1.5e-36 151.0
Cpe18g00201 CCT 27 126 HSF AT4G11660 65.0 2.0e-36 150.6
Cpe10g01200 . 16 217 HSF AT2G41690 54.9 4.9e-52 201.8
Cpe02g00187 CCT,CST 1 335 HSF AT1G46264 52.6 9.3e-89 324.3
Cpe11g00146 CCT,CST 19 374 HSF AT1G46264 54.2 2.1e-88 323.2
Cpe06g00166 CCT 1 330 HSF AT1G46264 52.2 9.6e-86 314.3
Cpe04g00882 CCT 1 186 HSF AT1G46264 51.8 4.3e-54 209.1
Cpe18g00201 CCT 30 208 HSF AT1G46264 52.2 6.3e-53 205.3
Cpe10g00435 CCT 4 198 HSF AT1G46264 50.2 9.4e-49 191.4
Cpe08g00869 . 33 138 HSF AT1G46264 72.6 1.2e-40 164.5
Cpe14g00974 . 82 175 HSF AT1G46264 77.7 3.6e-40 162.9
Cpe05g01537 . 5 105 HSF AT1G46264 68.3 6.3e-37 152.1
Cpe03g01613 CST 6 103 HSF AT1G46264 69.4 2.4e-36 150.2
Cpe12g01046 . 54 172 HSF AT1G46264 56.9 2.4e-36 150.2
Cpe04g01133 CCT,CST 11 178 HSF AT3G24520 67.3 1.4e-62 237.3
Cpe11g01109 CCT 11 181 HSF AT3G24520 64.3 1.3e-60 230.7
Cpe12g01046 . 27 250 HSF AT4G17750 53.5 3.1e-61 233.4
Cpe11g00071 . 18 243 HSF AT4G17750 51.4 3.7e-59 226.5
Cpe03g01464 . 53 258 HSF AT4G17750 55.8 4.1e-58 223.0
Cpe15g00018 . 166 395 HSF AT4G17750 50.4 5.4e-58 222.6
Cpe20g00480 CST 13 192 HSF AT4G17750 50.3 5.8e-44 176.0
Cpe05g01537 . 12 110 HSF AT4G17750 71.7 2.3e-40 164.1
Cpe11g00146 CCT,CST 20 118 HSF AT4G17750 71.7 7.3e-39 159.1
Cpe02g00187 CCT,CST 20 118 HSF AT4G17750 69.7 3.6e-38 156.8
Cpe06g00166 CCT 21 118 HSF AT4G17750 69.4 1.4e-37 154.8
Cpe12g01046 . 63 250 HSF AT5G16820 61.3 1.2e-59 228.0
Cpe15g00018 . 167 374 HSF AT5G16820 54.2 4.0e-58 223.0
Cpe07g00562 . 41 224 HSF AT5G16820 57.3 3.8e-56 216.5
Cpe03g01464 . 77 281 HSF AT5G16820 53.3 7.1e-55 212.2
Cpe11g00071 . 43 227 HSF AT5G16820 55.2 1.2e-54 211.5
Cpe19g01087 CST 10 192 HSF AT5G16820 51.9 5.6e-44 176.0
Cpe05g01537 . 13 112 HSF AT5G16820 78.0 8.4e-40 162.2
Cpe08g00869 . 13 516 HSF AT1G32330 52.1 2.7e-115 412.9
Cpe12g01046 . 51 250 HSF AT1G32330 55.8 1.5e-60 231.1
Cpe07g00562 . 1 221 HSF AT1G32330 50.2 3.0e-53 206.8
Cpe05g01537 . 11 106 HSF AT1G32330 76.0 2.2e-40 164.1
Cpe11g00146 CCT,CST 20 117 HSF AT1G32330 71.4 4.6e-38 156.4
Cpe02g00187 CCT,CST 22 117 HSF AT1G32330 71.9 1.8e-37 154.5
Cpe12g01046 . 63 250 HSF AT3G02990 62.1 1.2e-59 228.0
Cpe15g00018 . 167 390 HSF AT3G02990 50.9 7.9e-59 225.3
Cpe03g01464 . 77 280 HSF AT3G02990 54.3 3.0e-58 223.4
Cpe11g00071 . 43 243 HSF AT3G02990 52.7 3.7e-56 216.5
Cpe07g00562 . 41 217 HSF AT3G02990 56.0 1.5e-54 211.1
Cpe05g01537 . 13 106 HSF AT3G02990 77.7 8.2e-40 162.2
Cpe12g01046 . 51 246 HSF AT2G26150 61.2 5.4e-65 245.4
Cpe03g01464 . 65 277 HSF AT2G26150 54.4 3.0e-63 239.6
Cpe08g00869 . 8 243 HSF AT2G26150 56.1 2.8e-61 233.0
Cpe15g00018 . 150 359 HSF AT2G26150 50.7 4.4e-59 225.7
Cpe05g01537 . 2 111 HSF AT4G18880 67.3 4.4e-42 169.5
Cpe06g00166 CCT 24 128 HSF AT4G18880 62.4 2.1e-36 150.6
Cpe08g00417 CST 4 467 HSF AT4G13980 51.2 8.2e-117 417.9
Cpe03g01613 CST 6 445 HSF AT4G13980 52.8 6.5e-114 408.3
Cpe05g01537 . 4 111 HSF AT4G13980 65.7 2.6e-38 157.1
Cpe03g01464 . 65 257 HSF AT5G43840 53.4 1.7e-53 206.8
Cpe12g01046 . 51 247 HSF AT5G43840 51.8 1.3e-51 200.7
Cpe07g00562 . 29 220 HSF AT5G43840 53.1 3.8e-48 189.1
Cpe15g00018 . 155 470 HSF AT3G22830 52.2 4.1e-88 322.4
Cpe03g01464 . 38 286 HSF AT3G22830 58.2 5.7e-82 302.0
Cpe11g00071 . 31 241 HSF AT3G22830 55.9 4.9e-65 245.7
Cpe08g00869 . 9 242 HSF AT3G22830 55.1 6.6e-62 235.3
Cpe05g01537 . 5 105 HSF AT3G22830 69.3 4.3e-37 152.9
Cpe03g01464 . 63 277 HSF AT3G51910 57.9 5.2e-63 238.4
Cpe07g00562 . 29 249 HSF AT3G51910 51.3 9.9e-54 207.6
Cpe11g00071 . 31 248 HSF AT3G51910 51.8 9.9e-54 207.6
Cpe03g01464 . 63 266 HSF AT3G63350 52.6 2.5e-52 203.0
Cpe11g00071 . 20 231 HSF AT3G63350 50.9 6.2e-51 198.4
Cpe07g00562 . 18 228 HSF AT3G63350 50.9 2.6e-49 193.0
Cpe12g01046 . 64 252 HSF AT1G67970 51.1 1.0e-45 181.4
Cpe10g00435 CCT 2 302 HSF AT4G36990 51.7 1.1e-68 257.3
Cpe11g00146 CCT,CST 17 115 HSF AT5G62020 66.7 2.9e-38 156.4
Cpe05g00312 . 16 287 HSF AT4G11660 53.7 1.8e-74 276.9
Cpe13g00172 CCT,CST 16 343 HSF AT4G11660 51.3 2.2e-72 270.0
Cpe02g00187 CCT,CST 16 119 HSF AT4G11660 74.0 8.9e-45 178.3
Cpe06g00166 CCT 16 121 HSF AT4G11660 72.6 1.5e-44 177.6
Cpe11g00146 CCT,CST 16 121 HSF AT4G11660 71.7 2.0e-44 177.2
Cpe10g00435 CCT 2 108 HSF AT4G11660 71.0 4.1e-42 169.5
Cpe19g00618 CCT 5 102 HSF AT4G11660 69.4 2.8e-38 156.8
Cpe14g00974 . 82 175 HSF AT4G11660 69.1 1.5e-36 151.0
Cpe18g00201 CCT 27 126 HSF AT4G11660 65.0 2.0e-36 150.6
Cpe10g01200 . 16 217 HSF AT2G41690 54.9 4.9e-52 201.8
Cpe02g00187 CCT,CST 1 335 HSF AT1G46264 52.6 9.3e-89 324.3
Cpe11g00146 CCT,CST 19 374 HSF AT1G46264 54.2 2.1e-88 323.2
Cpe06g00166 CCT 1 330 HSF AT1G46264 52.2 9.6e-86 314.3
Cpe04g00882 CCT 1 186 HSF AT1G46264 51.8 4.3e-54 209.1
Cpe18g00201 CCT 30 208 HSF AT1G46264 52.2 6.3e-53 205.3
Cpe10g00435 CCT 4 198 HSF AT1G46264 50.2 9.4e-49 191.4
Cpe08g00869 . 33 138 HSF AT1G46264 72.6 1.2e-40 164.5
Cpe14g00974 . 82 175 HSF AT1G46264 77.7 3.6e-40 162.9
Cpe05g01537 . 5 105 HSF AT1G46264 68.3 6.3e-37 152.1
Cpe03g01613 CST 6 103 HSF AT1G46264 69.4 2.4e-36 150.2
Cpe12g01046 . 54 172 HSF AT1G46264 56.9 2.4e-36 150.2
Cpe04g01133 CCT,CST 11 178 HSF AT3G24520 67.3 1.4e-62 237.3
Cpe11g01109 CCT 11 181 HSF AT3G24520 64.3 1.3e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001412 1 3 2 0 1 2 2 2 2 2 2 2 2 3 2 2 2 4 2 2 2 2 2 2 2 2 2 12 6 0 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50358 PF00447 HSF_DNA-bind 3.10E-31 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g01046 Cpe_Chr12 FPKM 27.467529 28.75502 27.690504 26.468893 34.36998 32.428913 30.500698 35.074497 38.517273 36.028641