Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g01047 ATGATTTCATATCAAAACTCAATTCCAAACCCCAAACCCCAAACAAACAAAAAAAAGGCTTCTAATATGTTTTCTCCAACAATTATGGCCAATTCAACTCCCTTGTCTGATCAAGCTACCATCTTTTCCAATATTCACCACTCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCAGATGCAGAAGTGATAGCACTTTCACCAACAACACTTGTTGCAACAAATAGATTTGTGTGTGAAATTTGCAATAAGGGTTTCCAAAGGGATCAAAACTTGCAGCTTCACAGAAGAGGCCACAAACTTCCATGGAAATTGAAGCAAAGAAGCAGCAAAGAAGTGAAGAAGAAGGCGTATGTGTGCCCAGAGGAAGGTTGTGTTCATCATAATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTCCAGAAAACATGGAGAAAAGAAATGGAAATGCCTTAAATGCTCCAAACTCTACGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGACTTGTGGAACTAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCCAGGAAAGATAGGTTCGTAACCCATAGAGCTTTTTGTGATGCATTGGCGGAAGAGAGTGCACGGCTCTCGGCTAACCAATTGGCCATAGCTTCGGCTACCTCGGGTGCCACGGGCGTTGACCCTGAAGACTCAAATTCTCACCATTTTCACCAAATTCCAAATTTGCCCCTCTCCGATGACTCCTCCAATAATAACAATTACCACCCTTTTGGTCTAATTCAAGATCACCACCACAAGGCGAGCTCATCCTCCTCCTCCTCCTCCTCTTCCATGATAACCTCACCCTTTAGGAACCTCCACGTGTCGGTGCAACCGGCCTCAAATGCTGCCACGTCAGCTCAGCTATCAGCCACAGCCCTACTACAAAAGGCCGCAACAGTTGGCATTGGCGCTGCAAAATCAGGTCACCATCAGCCCGAGTCAGTGGGTCATATAACTCACTTCAACATCCCCGAGTTCCGCCCATCAAATCATATTAGCTCGCTGAGTCAACTCGGTCCAGACTACGCCACGTGGCAGAAGAGTGACCGGTTGACCAGGGACTTCCTCGGTCTTACCGGACATGGCAGTGGTTCCGGCAGCGGTGGAGCGGTACATGTTAGCATGATCGTTAAGGATATGCTAACGTACGCAGGTGGAACTGAGATGTTTAAGCCTCACAATAATAATAATAATAGTAATGGTTTTGGATATGGGGAGGCAGCTGCCAATGGAACTTGGGGAGACTGT 1311 46.3 MISYQNSIPNPKPQTNKKKASNMFSPTIMANSTPLSDQATIFSNIHHSPQKLKKKRSLPGNPDPDAEVIALSPTTLVATNRFVCEICNKGFQRDQNLQLHRRGHKLPWKLKQRSSKEVKKKAYVCPEEGCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCLKCSKLYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDRFVTHRAFCDALAEESARLSANQLAIASATSGATGVDPEDSNSHHFHQIPNLPLSDDSSNNNNYHPFGLIQDHHHKASSSSSSSSSSMITSPFRNLHVSVQPASNAATSAQLSATALLQKAATVGIGAAKSGHHQPESVGHITHFNIPEFRPSNHISSLSQLGPDYATWQKSDRLTRDFLGLTGHGSGSGSGGAVHVSMIVKDMLTYAGGTEMFKPHNNNNNSNGFGYGEAAANGTWGDC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8706432 8709523 + Cp4.1LG12g11510.1 Cpe12g01047 479044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g01047 437 Gene3D Classic Zinc Finger 115 206 - -
Cpe12g01047 437 MobiDBLite consensus disorder prediction 1 20 - -
Cpe12g01047 437 MobiDBLite consensus disorder prediction 228 285 - -
Cpe12g01047 437 Pfam Zinc-finger double-stranded RNA-binding 82 105 IPR022755 -
Cpe12g01047 437 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Cpe12g01047 437 SMART c2h2final6 82 104 IPR013087 -
Cpe12g01047 437 SMART c2h2final6 123 153 IPR013087 -
Cpe12g01047 437 MobiDBLite consensus disorder prediction 271 285 - -
Cpe12g01047 437 SUPERFAMILY beta-beta-alpha zinc fingers 81 178 IPR036236 -
Cpe12g01047 437 Gene3D Classic Zinc Finger 81 105 - -
Cpe12g01047 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Cpe12g01047 437 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 421 - -
Cpe12g01047 437 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 40 421 - -
Cpe12g01047 437 MobiDBLite consensus disorder prediction 242 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01047 Cpe-Chr12:8706432 Cpe02g01726 Cpe-Chr2:14127921 4.84E-107 dispersed
Cpe12g01047 Cpe-Chr12:8706432 Cpe17g00872 Cpe-Chr17:6760175 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50359 PF12171 zf-C2H2_jaz 5.20E-05 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g01047 K25870 - zju:107425870 447.588