Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe12g01053 | ATGGCGAACAATCATTCCGAGACTCCCTCCGATGATTTCCTAGAGCAGATTCTTGGGATTTCCCCTTTCGGTTCGGCGGAGCAAGGGTTAGCTGGAACCGACGGCGGATTGGCAGGAGCTGCTGCTGCGGCGGCTCACGGTCAGGCTCCGATGATGCTTCAACTTAGCTCCGGCGATGGCGGTGGCCACATCTCTACGATTGGAAGTGGAAGTGTCGGTGGTGCAGGGTTCCATGGCGGAACCCCTTTTCCTTTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGCAAGAGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCATCTGTGAAAAATGTTTATCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCACCGCATCCACCAACGATGCGCCCTAGGGTACGAGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGAATTGCAGAGAGAATCCGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGATGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTTCTACGTCTCCAAGTAAAGGTTTTAAGCATGAGTAGATTGGGTGGAGCTGGTGCGGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAGGGTGGTAGGAACCAACCTGCGTGGGAGAAGTGGTCGAACGACGGTACTGAGAGACAAGTTGCGAAGCTTATGGAAGAAAACGTGGGTTCTGCGATGCAATTCCTTCAATCGAAGGCACTCTGCATCATGCCCATCTCATTGGCTTCGGCAATTTATCACACGCAACCGCCCGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAATCCTCCTCCATAG | 930 | 51.61 | MANNHSETPSDDFLEQILGISPFGSAEQGLAGTDGGLAGAAAAAAHGQAPMMLQLSSGDGGGHISTIGSGSVGGAGFHGGTPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVYQGQQMHATMGAAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKMDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGSAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 8773170 | 8776428 | + | Cp4.1LG12g11360.1 | Cpe12g01053 | 479050 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe12g01053 | 309 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 153 | 202 | IPR011598 | GO:0046983 | |
| Cpe12g01053 | 309 | MobiDBLite | consensus disorder prediction | 133 | 157 | - | - | |
| Cpe12g01053 | 309 | SMART | finulus | 159 | 208 | IPR011598 | GO:0046983 | |
| Cpe12g01053 | 309 | Gene3D | - | 148 | 210 | IPR036638 | GO:0046983 | |
| Cpe12g01053 | 309 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 151 | 212 | IPR036638 | GO:0046983 | |
| Cpe12g01053 | 309 | Pfam | Helix-loop-helix DNA-binding domain | 158 | 202 | IPR011598 | GO:0046983 | |
| Cpe12g01053 | 309 | PANTHER | TRANSCRIPTION FACTOR UNE12-RELATED | 7 | 297 | - | - | |
| Cpe12g01053 | 309 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 297 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g00027 | Cpe-Chr4:244529 | Cpe12g01053 | Cpe-Chr12:8773170 | 9.25E-94 | dispersed | |
| Cpe11g01019 | Cpe-Chr11:8583989 | Cpe12g01053 | Cpe-Chr12:8773170 | 1.73E-47 | dispersed | |
| Cpe12g01053 | Cpe-Chr12:8773170 | Cpe03g01282 | Cpe-Chr3:10393240 | 2.47E-22 | dispersed | |
| Cpe12g01053 | Cpe-Chr12:8773170 | Cpe18g00556 | Cpe-Chr18:6104913 | 4.64E-59 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50361 | PF00010 | HLH | 1.00E-07 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe12g01053 | - | - | csv:101218718 | 496.123 |