Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g01053 ATGGCGAACAATCATTCCGAGACTCCCTCCGATGATTTCCTAGAGCAGATTCTTGGGATTTCCCCTTTCGGTTCGGCGGAGCAAGGGTTAGCTGGAACCGACGGCGGATTGGCAGGAGCTGCTGCTGCGGCGGCTCACGGTCAGGCTCCGATGATGCTTCAACTTAGCTCCGGCGATGGCGGTGGCCACATCTCTACGATTGGAAGTGGAAGTGTCGGTGGTGCAGGGTTCCATGGCGGAACCCCTTTTCCTTTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGCAAGAGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCATCTGTGAAAAATGTTTATCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCACCGCATCCACCAACGATGCGCCCTAGGGTACGAGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGAATTGCAGAGAGAATCCGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGATGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTTCTACGTCTCCAAGTAAAGGTTTTAAGCATGAGTAGATTGGGTGGAGCTGGTGCGGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAGGGTGGTAGGAACCAACCTGCGTGGGAGAAGTGGTCGAACGACGGTACTGAGAGACAAGTTGCGAAGCTTATGGAAGAAAACGTGGGTTCTGCGATGCAATTCCTTCAATCGAAGGCACTCTGCATCATGCCCATCTCATTGGCTTCGGCAATTTATCACACGCAACCGCCCGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAATCCTCCTCCATAG 930 51.61 MANNHSETPSDDFLEQILGISPFGSAEQGLAGTDGGLAGAAAAAAHGQAPMMLQLSSGDGGGHISTIGSGSVGGAGFHGGTPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVYQGQQMHATMGAAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKMDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGSAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP 309
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 8773170 8776428 + Cp4.1LG12g11360.1 Cpe12g01053 479050
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g01053 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Cpe12g01053 309 MobiDBLite consensus disorder prediction 133 157 - -
Cpe12g01053 309 SMART finulus 159 208 IPR011598 GO:0046983
Cpe12g01053 309 Gene3D - 148 210 IPR036638 GO:0046983
Cpe12g01053 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 212 IPR036638 GO:0046983
Cpe12g01053 309 Pfam Helix-loop-helix DNA-binding domain 158 202 IPR011598 GO:0046983
Cpe12g01053 309 PANTHER TRANSCRIPTION FACTOR UNE12-RELATED 7 297 - -
Cpe12g01053 309 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 297 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00027 Cpe-Chr4:244529 Cpe12g01053 Cpe-Chr12:8773170 9.25E-94 dispersed
Cpe11g01019 Cpe-Chr11:8583989 Cpe12g01053 Cpe-Chr12:8773170 1.73E-47 dispersed
Cpe12g01053 Cpe-Chr12:8773170 Cpe03g01282 Cpe-Chr3:10393240 2.47E-22 dispersed
Cpe12g01053 Cpe-Chr12:8773170 Cpe18g00556 Cpe-Chr18:6104913 4.64E-59 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50361 PF00010 HLH 1.00E-07 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g01053 - - csv:101218718 496.123