Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g01066 ATGAAAGAAATTCATGATCTTGATTTGCATGCAGAAATGGATCAAACACAGATGTGGGTTCATGATCAAAATCAACAAGAACAAGAACAACAACATCAAAATCATCAAATTTTTCTGTCGGATAATGATGATGATGCTTTGATGTTCTACTCTGATTTCCCTCCCTTGCCGGATTTTCCTTGCATGTCGTCTTCTTCGTCGTCTACTCCCGCTCCGGTCAAGCCCACCGTGTCGTTGTCGTCCTCGTCGTCGACTTCCTCCTCCTCCTCCGCCACTTCATGGGCAGTTTTGAAATCTGATGCTGATGAAATTGCTGAAGAAATCAGAATTAATGATGACAATTCCACCACCACCGCCGCCGCCGCTGTGTCGTCCCCTACGGCGGTGAAAACTGAGTTTAACGGCGGAGATTGTACGGATGACATGATGATGGAGACATTTGGATACATGGATTTACTTGAAGATAGCAATGAGTTTTTCGATCCGACGTGTATTTTTCAGAACGAACAACAACAACAACAACGAGACCCTTTGGAGGATTTGCAATTGGAAAGCTTTGAAGAAGTGGAAATGGAGGATTTGATGATGATGCATGGCGGTGAGAGTAATGATAATGGAGGAAAGCAAAACGTCGCCGCCGTCGCCGCCGTCGCGGCGGCGGCGGCGGAGGAGGAGGATTTGGCGAAGGTGTTTTTGGAGTGGCTTAGGAGTAATAGAGAGACGGTTTCTGCTGATGATTTGAGAAATGTTAGGATCAAAAAAGCTACTATTGAAAGCGCCGCCCGCCGCCTCGGCGGCGGCAAGGAGGGAATGAAACAGCTTTTGAAGCTTGTTCTTGAATGGGTTCAAACCAATCATCTTCACAAGAGGAAATTCAAAGAGATCAATGAAAATGAAGCCAATTTGATAGGGTTTCAAAACCCTAATTCCTCCGGCCACCCCTGGATCCAAACACCGCCGCCATTACCGCCTCCGCCGTTGTATTCTCCACCGATTCTTGGGTATGTCCAAGGTGGTGGTGGGGAAGCGTATGGCGGTGGCCGCGGTTATTCCGATCATTACCAATTACTTGACTCCTCATTGTCCTGGAGTAATAGTAATAGTAATAGTAATTTGCGGGGACAGTTCGGACTGTCCCCGTCGCATTTCAACTCGTTTGTTGATAATTTTGTGGCTGGACCGCCTTTGCCACCGCCGCAACCACAAGGTTTCGCGGCGGGGTACGGTAGGGGGCAGCAGTACCCTTATATGGGTCAGTATTTTCAAGGCCACGGTGGGGATAATGGTTTGGTTAGGTTGGATTCATCGGCGACAAAGGAGGCTCGAAAGAAGCGAATGGCAAGGCAGCGGAGATTCTCCGCTCACCACCGCCACAATCACGGTGGACACCACGGCAACCACCACCACCACCACGGCAACAGCCACCAAAATCAAATGAATCCTAATGCTACAGATCATTGCAACATGGCTACAACTTCTCAGCCAAATGCTGGAAACTGGGTCTACTGGCCATCCTCCACCGATGTAGTTCCAGCCGACTCGCCGGTGCACGCTGTCAATCGGTCTAATTCTTCCCTGCAAAACCAGCCGTATCCTCCCCGGATCCAGTCGGACCGACGACAGGGATGGAAACCAGAGAAAAATTTAAGGTTTCTTTTACAAAAAGTATTGAAGCAAAGCGATGTGGGAAATCTGGGGAGAATTGTATTGCCAAAGAAAGAAGCAGAAACCCATCTCCCAGAATTGGAGGCAAGAGATGGGATTTCCATAGCCATGGAAGACATTGGAACTTCAAGAGTTTGGAATATGCGTTATAGATATTGGCCAAACAACAAAAGCAGAATGTATCTCCTTGAAAATACAGGCGACTTTGTGAGAGCCAATGGACTTCAAGAAGGAGACTTCATTGTCATCTACTCCGACGTCAAGTGCGGAAAATATATGATTCGAGGAGTGAAAGTACGGCAACCGGGGTCGAAACCCGATAGCAAGAGGGGAGGAAAATCGCAAAGAAGCCATTCGACTGCCGGTGTGAACGCCAACGGCTTGTCGTCTTCACCGCCGACCCCCGCCACCCCGAGGAGGCTCTGA 2091 48.68 MKEIHDLDLHAEMDQTQMWVHDQNQQEQEQQHQNHQIFLSDNDDDALMFYSDFPPLPDFPCMSSSSSSTPAPVKPTVSLSSSSSTSSSSSATSWAVLKSDADEIAEEIRINDDNSTTTAAAAVSSPTAVKTEFNGGDCTDDMMMETFGYMDLLEDSNEFFDPTCIFQNEQQQQQRDPLEDLQLESFEEVEMEDLMMMHGGESNDNGGKQNVAAVAAVAAAAAEEEDLAKVFLEWLRSNRETVSADDLRNVRIKKATIESAARRLGGGKEGMKQLLKLVLEWVQTNHLHKRKFKEINENEANLIGFQNPNSSGHPWIQTPPPLPPPPLYSPPILGYVQGGGGEAYGGGRGYSDHYQLLDSSLSWSNSNSNSNLRGQFGLSPSHFNSFVDNFVAGPPLPPPQPQGFAAGYGRGQQYPYMGQYFQGHGGDNGLVRLDSSATKEARKKRMARQRRFSAHHRHNHGGHHGNHHHHHGNSHQNQMNPNATDHCNMATTSQPNAGNWVYWPSSTDVVPADSPVHAVNRSNSSLQNQPYPPRIQSDRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKPDSKRGGKSQRSHSTAGVNANGLSSSPPTPATPRRL 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8893190 8895780 + Cp4.1LG12g11230.1 Cpe12g01066 479063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g01066 696 Pfam B3 DNA binding domain 554 650 IPR003340 GO:0003677
Cpe12g01066 696 SUPERFAMILY DNA-binding pseudobarrel domain 552 648 IPR015300 -
Cpe12g01066 696 MobiDBLite consensus disorder prediction 437 492 - -
Cpe12g01066 696 CDD BfiI_C_EcoRII_N_B3 551 652 - -
Cpe12g01066 696 MobiDBLite consensus disorder prediction 520 535 - -
Cpe12g01066 696 SMART B3_2 553 655 IPR003340 GO:0003677
Cpe12g01066 696 MobiDBLite consensus disorder prediction 520 540 - -
Cpe12g01066 696 MobiDBLite consensus disorder prediction 61 93 - -
Cpe12g01066 696 MobiDBLite consensus disorder prediction 475 492 - -
Cpe12g01066 696 Gene3D - 549 665 IPR015300 -
Cpe12g01066 696 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 687 - -
Cpe12g01066 696 MobiDBLite consensus disorder prediction 655 696 - -
Cpe12g01066 696 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 687 IPR044800 GO:0003700
Cpe12g01066 696 MobiDBLite consensus disorder prediction 443 474 - -
Cpe12g01066 696 MobiDBLite consensus disorder prediction 670 696 - -
Cpe12g01066 696 ProSiteProfiles B3 DNA-binding domain profile. 553 655 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g01066 Cpe17g00978 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01959 Cpe-Chr1:16714403 Cpe12g01066 Cpe-Chr12:8893190 2.63E-40 dispersed
Cpe12g01066 Cpe-Chr12:8893190 Cpe13g00523 Cpe-Chr13:5335659 1.54E-26 dispersed
Cpe12g01066 Cpe-Chr12:8893190 Cpe17g00978 Cpe-Chr17:7463183 7.41E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50365 PF02362 B3 1.80E-17 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g01066 - - cmax:111488128 1157.9