Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe12g01106 | ATGATTGTTTATGCGAAGACGGTTAAGGATGTGACTGAGTTACAGATTGGCGTTACGGGTAGGCCAACATCTTGTGACATTCAAGCTCATAAAGGTGATAGAATCAAAGTTCACTATCGTGGGAAGCTCACAGATGGGACTGTTTTCGACTCTAGTTTTGAAAGGGGTGACCCCATTGAGTTTGAGCTGGGCGCTGGTCAAGTAATTAAAGGATGGGACCAAGGGTTATTGGGAATGTGCGTTGGTGAGAAACGGAAACTCAAAATTCCTGCAAAGTTGGGGTATGGACCGCAGGGCTCTCCACCAACCATACCAGGTGGTGCAACACTTATATTTGACACTGAGCTTGTGGCTGTTAATGGGAAACCATCAAGTGGTGGAAACTCAGATGATGATGACAATGCCTTTATAAACATTGAACTCTTATCTATATATATGGGAGATTATGATTTTGATATCCCTGCTGCGCCTGACATGAACGACGACTTCGATCTTCCCGATGAACCCGCTGCGCTTAAGGTTGGGGAGGAGAAGGAAATTGGAAATCAAGGGTTGAAGAAGAAGCTTTTGAAGGAAGGTGAAGGATGGGTCACTCCTGAAAATGGCGACGAGGTTGAAGTTCACTATACTGGGACTTTGCTGGATGGGACTCAGTTTGATTCGAGCCGCGATCGTGGTACCCCGTTCAAGTTCACTCTTGGTCAAGGACAAGTGATCAAAGGTTGGGATCTGGGTATTAAAACAATGAAGAAAAGTGAAAAAGCTCTTTTCACCATTCCTCCAGAGCTGGCATATGGTGAATCTGGTTCCCCACCGACCATCCCTCCTAGTGCGACATTGCAGTTCGACGTCGAGTTACTATCTTGGTCAAGCGTTAAGGACATATGTAAGGACGGAGGAATATTCAAGAAGATCCTAACTGAAGGGGACAAATGGGATAATCCGAAGGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTAGAAGATGGAACGCTTGTTGCCAAAGCTGATGGAGTGGAATTCACCGTTGGGGATGGTTACTTTTGTCCTGCCGTTGCGAGGGCTGTAAAAACCATGAAGATAGGCGAAAAGGCGCTCCTTACTGTGAAGCCACAATATGGGTTTGGGGAGAAAGGTAAACCAGCCTCGAGTAACGAACGTGCAGTTCCACCGAATGCATCGCTCGATATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAAAAGGTTATCAAGAAAATTCTAAAAGAAGGAGAAGGGTATGAGAAGCCAAATGATGGAGCCATTGTGAAAGTAAAATTGACTGGGAAGTTGGGAGATGGCAAGGTATTCTTGAGGAAGGGATATGATGATGGCGAAGAGCCATTCGAGTTTAAAACCGACGAGGAACAAGTGATCGATGGCCTCGACAAAGCCGTGGCGACAATGAAGAAAGGAGAGATAGCCCTGGTGACAATAGCACAAGAGTACGCTTTTGGATCGTCCGAGTCACAACAGGAACTAGCTGTAGTTCCTCCAAACTCAACTGTGTATTATGAGGTCGAGCTGGTGGCTTTTGACAAGGAGAAGGAATCATGGGATATGAATAACCAGGAAAAGGTTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTCAAGTCTGGAAAATTTGCTAGAGCTTCAAAGAGATATGAGAAGGCGGTGAAGTTCATTGAATACGATTCTTCATTTAGTGAAGACGAGAAAAAGCAGGCGAAGGCGTTGAAAGTTGCATGCAATTTGAACAATGCAGCTTGTAAATTGAAGCTAAAGCAATACAACGAGGCAGAGAAATTGTGTACCAAGGTGCTGGAACTTGAGAGTTCAAATGTTAAGGCTCTCTACAGAAGGGCTCAAGCGTATATCGAACTAACGGATTTCGATTTGGCTGAATTTGACATCAAGAAAGCTCTCGATATCGATCCGAACAACAGGGATGTGAAATTGGAGTACAAAACACTGAAGGAGAAGGTGAAGGAATACAACAAAAAGGATGCCAAGTTCTACGGCAACATGTTTGCCAAGATGAAGAATTAG | 2088 | 44.3 | MIVYAKTVKDVTELQIGVTGRPTSCDIQAHKGDRIKVHYRGKLTDGTVFDSSFERGDPIEFELGAGQVIKGWDQGLLGMCVGEKRKLKIPAKLGYGPQGSPPTIPGGATLIFDTELVAVNGKPSSGGNSDDDDNAFINIELLSIYMGDYDFDIPAAPDMNDDFDLPDEPAALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKSEKALFTIPPELAYGESGSPPTIPPSATLQFDVELLSWSSVKDICKDGGIFKKILTEGDKWDNPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVGDGYFCPAVARAVKTMKIGEKALLTVKPQYGFGEKGKPASSNERAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLTGKLGDGKVFLRKGYDDGEEPFEFKTDEEQVIDGLDKAVATMKKGEIALVTIAQEYAFGSSESQQELAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKVEAAGKKKEEGNVLFKSGKFARASKRYEKAVKFIEYDSSFSEDEKKQAKALKVACNLNNAACKLKLKQYNEAEKLCTKVLELESSNVKALYRRAQAYIELTDFDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKN | 695 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 9151197 | 9160103 | - | Cp4.1LG12g10730.1 | Cpe12g01106 | 479103 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe12g01106 | 695 | Pfam | Tetratricopeptide repeat | 629 | 661 | IPR013105 | - | |
| Cpe12g01106 | 695 | Gene3D | Tetratricopeptide repeat domain | 531 | 688 | IPR011990 | GO:0005515 | |
| Cpe12g01106 | 695 | SUPERFAMILY | FKBP-like | 294 | 410 | - | - | |
| Cpe12g01106 | 695 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 527 | 694 | - | - | |
| Cpe12g01106 | 695 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 31 | 118 | - | - | |
| Cpe12g01106 | 695 | SMART | tpr_5 | 545 | 578 | IPR019734 | GO:0005515 | |
| Cpe12g01106 | 695 | SMART | tpr_5 | 594 | 627 | IPR019734 | GO:0005515 | |
| Cpe12g01106 | 695 | SMART | tpr_5 | 628 | 661 | IPR019734 | GO:0005515 | |
| Cpe12g01106 | 695 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 435 | 528 | IPR001179 | GO:0003755 | |
| Cpe12g01106 | 695 | Coils | Coil | 661 | 681 | - | - | |
| Cpe12g01106 | 695 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 32 | 120 | IPR001179 | GO:0003755 | |
| Cpe12g01106 | 695 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 148 | 413 | - | - | |
| Cpe12g01106 | 695 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 419 | 526 | - | - | |
| Cpe12g01106 | 695 | SUPERFAMILY | TPR-like | 533 | 693 | IPR011990 | GO:0005515 | |
| Cpe12g01106 | 695 | Gene3D | - | 294 | 407 | IPR046357 | GO:0003755 | |
| Cpe12g01106 | 695 | SUPERFAMILY | FKBP-like | 410 | 545 | - | - | |
| Cpe12g01106 | 695 | SUPERFAMILY | FKBP-like | 21 | 120 | - | - | |
| Cpe12g01106 | 695 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 318 | 407 | IPR001179 | GO:0003755 | |
| Cpe12g01106 | 695 | SUPERFAMILY | FKBP-like | 179 | 294 | - | - | |
| Cpe12g01106 | 695 | ProSiteProfiles | TPR repeat profile. | 628 | 661 | IPR019734 | GO:0005515 | |
| Cpe12g01106 | 695 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 527 | 694 | - | - | |
| Cpe12g01106 | 695 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 31 | 118 | - | - | |
| Cpe12g01106 | 695 | Gene3D | - | 2 | 120 | IPR046357 | GO:0003755 | |
| Cpe12g01106 | 695 | Gene3D | - | 408 | 529 | IPR046357 | GO:0003755 | |
| Cpe12g01106 | 695 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 202 | 290 | IPR001179 | GO:0003755 | |
| Cpe12g01106 | 695 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 197 | 287 | IPR001179 | GO:0003755 | |
| Cpe12g01106 | 695 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 26 | 117 | IPR001179 | GO:0003755 | |
| Cpe12g01106 | 695 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 315 | 403 | IPR001179 | GO:0003755 | |
| Cpe12g01106 | 695 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 429 | 525 | IPR001179 | GO:0003755 | |
| Cpe12g01106 | 695 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 148 | 413 | - | - | |
| Cpe12g01106 | 695 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 419 | 526 | - | - | |
| Cpe12g01106 | 695 | Gene3D | - | 174 | 293 | IPR046357 | GO:0003755 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g00537 | Cpe-Chr5:3203642 | Cpe12g01106 | Cpe-Chr12:9151197 | 4.42E-16 | dispersed | |
| Cpe08g01061 | Cpe-Chr8:8086383 | Cpe12g01106 | Cpe-Chr12:9151197 | 2.21E-09 | dispersed | |
| Cpe10g00006 | Cpe-Chr10:30393 | Cpe12g01106 | Cpe-Chr12:9151197 | 5.90E-16 | dispersed | |
| Cpe12g01106 | Cpe-Chr12:9151197 | Cpe17g01128 | Cpe-Chr17:8559352 | 1.86E-10 | dispersed | |
| Cpe15g00372 | Cpe-Chr15:4942215 | Cpe12g01106 | Cpe-Chr12:9151197 | 1.66E-09 | dispersed | |
| Cpe16g00929 | Cpe-Chr16:8593296 | Cpe12g01106 | Cpe-Chr12:9151197 | 3.35E-14 | dispersed | |
| Cpe20g00608 | Cpe-Chr20:3746886 | Cpe12g01106 | Cpe-Chr12:9151197 | 8.94E-09 | dispersed | |
| Cpe02g01573 | Cpe-Chr2:13293041 | Cpe12g01106 | Cpe-Chr12:9151197 | 2.63E-10 | transposed | |
| Cpe03g01284 | Cpe-Chr3:10409223 | Cpe12g01106 | Cpe-Chr12:9151197 | 9.77E-25 | transposed | |
| Cpe12g00026 | Cpe-Chr12:129450 | Cpe12g01106 | Cpe-Chr12:9151197 | 1.09E-13 | transposed | |
| Cpe14g00147 | Cpe-Chr14:808802 | Cpe12g01106 | Cpe-Chr12:9151197 | 6.56E-06 | transposed | |
| Cpe16g00716 | Cpe-Chr16:7299872 | Cpe12g01106 | Cpe-Chr12:9151197 | 1.64E-10 | transposed | |
| Cpe19g00325 | Cpe-Chr19:2813026 | Cpe12g01106 | Cpe-Chr12:9151197 | 1.67E-21 | transposed | |
| Cpe12g01106 | Cpe-Chr12:9151197 | Cpe13g01107 | Cpe-Chr13:8901026 | 1.00E-09 | wgd | |
| Cpe12g01106 | Cpe-Chr12:9151197 | Cpe17g01127 | Cpe-Chr17:8551303 | 9.36E-24 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe12g01106 | K09571 | - | csv:101214513 | 1010.75 |