Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g01135 ATGGACAATCCCGTGAATATCGTTGTTGGTTCTCACATATGGGTGGGAGATATAGAGTCTGTTTGGATCGATGGACTCGTATTGAACATCATTGGGGAAGATGCTGAGATTCAAACTAGTGATGGGAGGCAGGTGGTTGTAAAAATGTCGAATCTATATCCAAGGGATGCAGAAGCTCCTGCTACTGGAATTGACGATATGACTAGAATGTCGTATTTGAATGAGCCTGGGTTGCTGCATAATTTGGCTATCAGATATGCAATAAATGAAATCTATACTTATACTGGAAATATTCTTATTGCCATCAACCCATTCCAAAGTATTTCAAATCTGTATGATCCGTGTGTGATGGAGCAGTACAAGGGAGCACCAGTGGGGGAGCTGAAGCCTCATGTTTTTGCAATTGCTGATGTCGCATATAGGGCTATGATAACTAATGGGAAAAGCAACTCTATTCTGGTAAGTGGTGAAAGTGGGGCTGGTAAGACTGAAACCACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCAAGGCTGCATCTGAAGGACGGTCTGTTCAACAACAAGTTTTAGAATCAAATCCAGTTCTTGAAGCTTTTGGCAATGCAAAAACAGTTAGAAACAACAATTCAAGTGGATATTTGTTTCAGGAGAGAGAGAGGTATAAGCTGGGAAATCCGAAATCATTTCACTATCTAAATCAATCAAATTGTTATGAGCTGGCTGGTGTGAATGATGCTCATGATTATCTTGCCACAAAGAGAGCCATGGATATTGTTGGAATAGGTGAACAAGAGCAGGATGCAATTTTCCGAGTTGTGGCTGCAATACTCCATCTTGGTAATGTTGACTTTGCAAAAGGAGAGGAGTCTGATTCATCATTTATAAAAGATGAAGAATCAAAATTTCATCTTCACATGACAGCAGAGCTTCTCATGTGTGATCCCAATGCATTAGAAGATGCTCTTTGCAAGCGCATGATGATTACACGGGAGGAAATCATCAAGAGAAGTCTTGATCCGCTTGGTGCAACTGTTAGCAGGGATGGTTTAGCCAAGACAATATATTCTCGTTTGTTTGACTGTTTTGAGCAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTATTCAAGATGGAGCAAGAAGAATATGTCAAAGAGGAAATTGATTGGAGCTACATAGAATTTGTTGATAATCAAGATGTCCTTGATCTAATTGAGAAGGTTCAATTTTTTCTTCTTAACTATGCTCTTGGAGTTCAAAGATGCCACTCACAACTATCCCTCTCTGGCATAGCCTCTAATTCTTTGTGCCTTTGCAGAAACCAGGTGGAATCATTGCTCTTCTTGATGAAGCTTGACAAAAATAAAGATTATGTGGTCGCTGAACATCAAGATTTGTTAATTGCTTCAAAATGTTCTTTTGTATCTGGCCTTTTCCCTCCTCCTGAGGAGGCGACCAAATCATCAAAGTTTTCTTCAATTGGCTCTCGTTTTAAGTTACAACTACAGCAGTTGATGGAAACATTAAATTCGACCGAACCCCATTATATAAGATGCGTGAAGCCCAATACTGTCCTACAACCTGCCATATTTGAGAATGCTACTGTTATGCAACAATTACGTCATGGAGGTGTTTTGGAGGCTGTTAGAATTAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCTCGATTTGGAATTCTTGCACCCGAGGTATTGGAAGGGGACTACGAAGAGATGGTAGCATGCAGGAAGATTCTAGAGAAGACAGGACTTGAAGGTTATCTGATAGGGAAATCAAAACTTTTCCTAAGAGGTAGTCTGATGGCCGAACTAGATGCACAAAGAACAAGAGTATATAGTGGAGCTGCCACAGTTATACAGAAGCGTATCAAATCTCGAATTGAACGTAAAAAGTACATTCGTATGCGAAGAAGTTGCACTCGTCTACAGTCATATTGGAGAGGTGTTCTTGCTCGAGAGTCATATGAAAGTAGGAGAAGAGAATCAGCTGCCCTCAAAATTCAAAGGAATAGTCTTGCATATATTGCCAGGAGCATCCATATTAAAACAAGGCTCGCTGTAATTGTTCTTCAGGCTGGTATACGAGCAATGGTTGCTCGGAGTGAATACAGACGTAGGAGGCAGGTTAACGCTGCTGCAATAGTTATTCAATCTTATTGGCGTCAGTATTTGAAGTCTAAGATGGTTAGAAATCCATCAACCGGTTCACAATGCGGATTGAACTCAAAAACTGCTGGTGAAGGTCTTAAGAAGCAAAGGATGGCTGACTCGGAAGAAACAGAGGAGGGTCTTAACTTGCCTGCGTTGCTCAACAGCAGGACAGATGCCATTGATGAAACAATTGAAATGATTGCCAAGGAAAACCGTGTTTCTCCAAAAGAAATAGAAGAAGCATACTTTATTATTAAAGAGCCCGGTAGTTCAGTTGAAGAAGCAGAATCTATGGTCACTCTCAGAGCAGAAGTGGCTAATCTAAGGTTTTCTTGCTCCTCGAATTCGAAAATGACTAAAGGTGGCAGAACACATTTACGCAAACAGGCCATGTTGCAGGCTGAAAGACACAGAGCTAATGAGTTTGAAAGGAAGTATATTGCAACGCTGAAAGTAAATGCAGAAGGATGTAGAAGACTAAAAGAAAACGAAAGGATGGTGCGTCAACTTCAGGACTGCATAAGCAGGATGATACATGGCTTGTCAAACCAAATCACGGAGATGAAAATGATCATGTGTACTCCTCCTAGGCCAGATGCATCTAGTTCTATTCCAAACAGGGTTCCGACGGATGCCACATCTAGTTGCTCTTATTCCTCGTCAGAAGACTTCACCTTTCCTGTTCCAAGATCTGACAATGATAGGGAAGGGGGATTCTCTGACTACTTCTAA 2946 40.87 MDNPVNIVVGSHIWVGDIESVWIDGLVLNIIGEDAEIQTSDGRQVVVKMSNLYPRDAEAPATGIDDMTRMSYLNEPGLLHNLAIRYAINEIYTYTGNILIAINPFQSISNLYDPCVMEQYKGAPVGELKPHVFAIADVAYRAMITNGKSNSILVSGESGAGKTETTKMLMCYLAFLGGKAASEGRSVQQQVLESNPVLEAFGNAKTVRNNNSSGYLFQERERYKLGNPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEQEQDAIFRVVAAILHLGNVDFAKGEESDSSFIKDEESKFHLHMTAELLMCDPNALEDALCKRMMITREEIIKRSLDPLGATVSRDGLAKTIYSRLFDCFEQFCINYTNEKLQQHFNQHVFKMEQEEYVKEEIDWSYIEFVDNQDVLDLIEKVQFFLLNYALGVQRCHSQLSLSGIASNSLCLCRNQVESLLFLMKLDKNKDYVVAEHQDLLIASKCSFVSGLFPPPEEATKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNTVLQPAIFENATVMQQLRHGGVLEAVRIKCAGYPTHRTFSEFLSRFGILAPEVLEGDYEEMVACRKILEKTGLEGYLIGKSKLFLRGSLMAELDAQRTRVYSGAATVIQKRIKSRIERKKYIRMRRSCTRLQSYWRGVLARESYESRRRESAALKIQRNSLAYIARSIHIKTRLAVIVLQAGIRAMVARSEYRRRRQVNAAAIVIQSYWRQYLKSKMVRNPSTGSQCGLNSKTAGEGLKKQRMADSEETEEGLNLPALLNSRTDAIDETIEMIAKENRVSPKEIEEAYFIIKEPGSSVEEAESMVTLRAEVANLRFSCSSNSKMTKGGRTHLRKQAMLQAERHRANEFERKYIATLKVNAEGCRRLKENERMVRQLQDCISRMIHGLSNQITEMKMIMCTPPRPDASSSIPNRVPTDATSSCSYSSSEDFTFPVPRSDNDREGGFSDYF 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9324251 9343386 + Cp4.1LG12g10670.1 Cpe12g01135 479132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g01135 981 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cpe12g01135 981 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 6 214 - -
Cpe12g01135 981 PANTHER MYOSIN 6 214 - -
Cpe12g01135 981 PANTHER MYOSIN 219 363 - -
Cpe12g01135 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 681 IPR027417 -
Cpe12g01135 981 MobiDBLite consensus disorder prediction 937 965 - -
Cpe12g01135 981 Gene3D Kinesin motor domain 522 560 IPR036961 -
Cpe12g01135 981 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 219 363 - -
Cpe12g01135 981 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01135 981 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01135 981 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01135 981 ProSiteProfiles IQ motif profile. 633 662 IPR000048 GO:0005515
Cpe12g01135 981 MobiDBLite consensus disorder prediction 935 981 - -
Cpe12g01135 981 ProSiteProfiles IQ motif profile. 704 733 IPR000048 GO:0005515
Cpe12g01135 981 Gene3D - 634 686 - -
Cpe12g01135 981 Gene3D - 364 439 - -
Cpe12g01135 981 PANTHER MYOSIN 363 418 - -
Cpe12g01135 981 PANTHER MYOSIN 461 941 - -
Cpe12g01135 981 SMART MYSc_2a 56 631 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01135 981 MobiDBLite consensus disorder prediction 966 981 - -
Cpe12g01135 981 Gene3D - 216 261 - -
Cpe12g01135 981 Pfam IQ calmodulin-binding motif 707 725 IPR000048 GO:0005515
Cpe12g01135 981 Pfam IQ calmodulin-binding motif 732 745 IPR000048 GO:0005515
Cpe12g01135 981 Pfam IQ calmodulin-binding motif 657 676 IPR000048 GO:0005515
Cpe12g01135 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 684 750 IPR027417 -
Cpe12g01135 981 Gene3D Kinesin motor domain 12 215 IPR036961 -
Cpe12g01135 981 Pfam Myosin head (motor domain) 363 417 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01135 981 Pfam Myosin head (motor domain) 461 618 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01135 981 Pfam Myosin head (motor domain) 65 214 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01135 981 Pfam Myosin head (motor domain) 218 362 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01135 981 ProSiteProfiles IQ motif profile. 656 685 IPR000048 GO:0005515
Cpe12g01135 981 ProSiteProfiles Myosin motor domain profile. 62 630 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01135 981 Gene3D Myosin VI head, motor domain, U50 subdomain 262 363 - -
Cpe12g01135 981 Gene3D - 704 749 - -
Cpe12g01135 981 Gene3D - 564 631 - -
Cpe12g01135 981 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 363 418 - -
Cpe12g01135 981 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 461 941 - -
Cpe12g01135 981 Gene3D - 461 521 - -
Cpe12g01135 981 Gene3D Myosin VI head, motor domain, U50 subdomain 467 499 - -
Cpe12g01135 981 SMART iq_5 655 677 IPR000048 GO:0005515
Cpe12g01135 981 SMART iq_5 632 654 IPR000048 GO:0005515
Cpe12g01135 981 SMART iq_5 729 751 IPR000048 GO:0005515
Cpe12g01135 981 SMART iq_5 703 725 IPR000048 GO:0005515
Cpe12g01135 981 SMART iq_5 680 702 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01135 Cpe-Chr12:9324251 Cpe18g00337 Cpe-Chr18:4819598 0 dispersed
Cpe12g01135 Cpe-Chr12:9324251 Cpe13g01088 Cpe-Chr13:8773062 5.22E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g01135 K10357 - csv:101220626 1410.97