Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g01138 ATGGATTCGGCGAGGAGTTGGTTCAATAAGCTTCAGCCGAGAGATAGGCCGAGAGGTTCTTCGAAGAAGAAGGACGATAGTATGGAAGGGAACGAGGATTCTACCGATAAAATGGACGAAGAAGCGCATTCGAACAGCACTAAGCAGAAGGCTGCTGCGGCAAAGCAGTACATCGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAAAGGAAGGAAAGACGAAATATATTGGAAAAGAAGTTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTCAAGTATTTAGAGAAGAAGGAAACTGAATATATGCGCCTCAAAAGGCACAAAATGGGCGTCAGTGATTTTGATTTACTAACAATTATTGGCAAAGGTGCATTTGGGGAGGTTCGTGTATGTAGAGAGAAGACTTCAGGTCAGGTATATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGTATCGTGAAACTCTATTGTTCTTTTCAAGATGACGAGTTTCTTTATCTCATCATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGATGATGAAGCAAGGTTTTACGTTGGAGAGATAGTTTTGGCTGTTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCGGACTTTGGACTGTGCAAACCATTAGATTGCAGTACACTCAAAGAACAAGATCTTGATATAGGGAGTGTCCGTAATGAANTATTGCTCCGGAGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCGACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGGTGTTCCCTGATGAAGCAAAGCTATCTCCCTTGGCAAAAGATCTTATCAGCAAACTACTATGCAATGTTGACGAGAGGCTAGACAGCAATTGTATCGTGAAACTCTATTGTTCTTTTCAAGATGACGAGTTTCTTTATCTCATCATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGATGATGAAGCAAGGTTTTACGTTGGAGAGATAGTTTTGGCTGTTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCGGACTTTGGACTGTGCAAACCATTAGATTGCAGTACACTCAAAGAACAAGATCTTGATATAGGGAGTGTCCGTAATGAAGCTGGACAAAGTGATGAGCGTAATGCAGCTCCCCGTACTCAACAAGAGCAACTCCAACATTGGCAGAAGAATCGAAGNATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCGACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGGTGTTCCCTGATGAAGCAAAGCTATCTCCCTTGGCAAAAGATCTTATCAGCAAACTACTATGCAATGTTGACGAGAGGCTAGGTACAAATGGCGCGGATGACATAAAGGTTCATCCGTGGTTTGAAGGTATTGAATGGGATAGGCTATATGAAATGGAAGCTGCATTTGTTCCCGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTGTGACTTGCAAAGCAGTTCTTCATCTAAATCTGGTCCATGGAGAAAGGTAACACTAAGTATTAGTAATAATTCATATAGCGTTTCTTTTATCATTCATATTGCCCTTATTTCCACTATGATGCTCTCATCTAAGGACATCAACTTCGTTGGATATACTTACAAGAACTTCGAAATTGTCAACGATTATCAATTGCCTGGGATGGATGGCGAAGAGGCAACAGATGCATCTGATACATCTAATTATGGTCAGTCCAGAGAAGGTAGCTTTTCAAACTCAATGACATCTCAACAGGATGAAGTTGAAACAAGGAAAGAGCCGATGTAA 2115 40.33 MDSARSWFNKLQPRDRPRGSSKKKDDSMEGNEDSTDKMDEEAHSNSTKQKAAAAKQYIENHYKEQMKNLQERKERRNILEKKLADADVSEEDQNNLLKYLEKKETEYMRLKRHKMGVSDFDLLTIIGKGAFGEVRVCREKTSGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTDDEARFYVGEIVLAVESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLKEQDLDIGSVRNEXLLRRWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLVFPDEAKLSPLAKDLISKLLCNVDERLDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTDDEARFYVGEIVLAVESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLKEQDLDIGSVRNEAGQSDERNAAPRTQQEQLQHWQKNRXIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLVFPDEAKLSPLAKDLISKLLCNVDERLGTNGADDIKVHPWFEGIEWDRLYEMEAAFVPEVKDELDTQNFEKFEECDLQSSSSSKSGPWRKVTLSISNNSYSVSFIIHIALISTMMLSSKDINFVGYTYKNFEIVNDYQLPGMDGEEATDASDTSNYGQSREGSFSNSMTSQQDEVETRKEPM 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9355714 9363366 - Cp4.1LG12g10480.1 Cpe12g01138 479135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g01138 704 PANTHER SERINE/THREONINE-PROTEIN KINASE 492 664 - -
Cpe12g01138 704 SMART pkinase_C_6 564 652 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe12g01138 704 MobiDBLite consensus disorder prediction 9 46 - -
Cpe12g01138 704 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 292 354 - -
Cpe12g01138 704 Pfam Protein kinase domain 122 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g01138 704 Pfam Protein kinase domain 352 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g01138 704 ProSiteProfiles Protein kinase domain profile. 120 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g01138 704 MobiDBLite consensus disorder prediction 670 694 - -
Cpe12g01138 704 Coils Coil 62 82 - -
Cpe12g01138 704 SUPERFAMILY Protein kinase-like (PK-like) 101 355 IPR011009 -
Cpe12g01138 704 MobiDBLite consensus disorder prediction 466 482 - -
Cpe12g01138 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Cpe12g01138 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Cpe12g01138 704 Gene3D Phosphorylase Kinase; domain 1 356 594 - -
Cpe12g01138 704 ProSiteProfiles AGC-kinase C-terminal domain profile. 564 660 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe12g01138 704 MobiDBLite consensus disorder prediction 1 73 - -
Cpe12g01138 704 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 276 - -
Cpe12g01138 704 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 355 462 - -
Cpe12g01138 704 SMART serkin_6 355 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g01138 704 SMART serkin_6 120 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g01138 704 ProSiteProfiles Protein kinase domain profile. 357 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g01138 704 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Cpe12g01138 704 MobiDBLite consensus disorder prediction 664 704 - -
Cpe12g01138 704 Gene3D Phosphorylase Kinase; domain 1 91 203 - -
Cpe12g01138 704 MobiDBLite consensus disorder prediction 460 482 - -
Cpe12g01138 704 SUPERFAMILY Protein kinase-like (PK-like) 353 635 IPR011009 -
Cpe12g01138 704 Pfam Protein kinase C terminal domain 582 650 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cpe12g01138 704 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 492 664 - -
Cpe12g01138 704 PANTHER SERINE/THREONINE-PROTEIN KINASE 292 354 - -
Cpe12g01138 704 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 276 - -
Cpe12g01138 704 PANTHER SERINE/THREONINE-PROTEIN KINASE 355 462 - -
Cpe12g01138 704 Gene3D Transferase(Phosphotransferase) domain 1 204 355 - -
Cpe12g01138 704 Gene3D Transferase(Phosphotransferase) domain 1 383 581 - -
Cpe12g01138 704 CDD PKc 352 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01138 Cpe-Chr12:9355714 Cpe17g00198 Cpe-Chr17:1277546 6.54E-162 dispersed
Cpe12g01138 Cpe-Chr12:9355714 Cpe17g00907 Cpe-Chr17:7020142 1.17E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62769 PF00069 Pkinase 2.70E-48 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g01138 K08790 - csv:101221720 624.009