Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g01163 TACTTGCAGGCTTCTACTACCGGTCTTGTTGGAGTTGGATCGCTTGTTTGGTTGGAGGATTCTGAAGAAGCTTGGATAGAGGGTGAAGTGTTAGAAGTTCGTGGCGAAGAAATTAAGGTCCTATGCACCTCAGGGAAAACGGTTGCAGTTAAAGCAGCTAATGTCTACCCGAAAGATTCCGAAGTGCCACCTTGTGGTGTGGATGACATGACCAAGTTGGCTTACTTGCACGAACCTGGGGTGCTACACAATTTAAAATTGAGATATGATATTAATGAAATATATACTTATACAGGGAACATATTGATTGCTGTAAACCCTTTTACGAGGTTACCCCATCTGTATGATAGCTATATGATGGCACAATATAAAGGGGCCGGATTCGGTGAGCTGAGTCCACATCCATTTGCAATTGCAGATGCTGCCTACAGACTTATGGTCAATGAGAAAAAAAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACAAAGTTGCTTATGCGTTATCTTGCGTATATGGGAGGGAGAGCTGCTACTGAGGGGAGGTCAGTTGAGCAGCAAGTTCTCGAGTCAAATCCTGTTTTAGAAGCATTTGGGAATGCGAAAACTGATGTCAAGAAGTATAAATTGGAAAACCCAAGAAGTTTCCATTATCTAAATCAATCAAACTGCTATGAGTTGGATGAAATTGATGATGCCAAAGAATATATTGCAACAAGAAAAGCAATGGAAGTTGTTGGGATAAGTTCGGACGAGCAAGATGGAATATTTCGTGTTGTAGCTGCGATTCTTCATCTAGGAAACATCGAATTCGCAAAAGGGAAGGAGGCCGATTCTTCCGTTCCGAAAGATGAAAAATCTTGGTTCCATCTTAGAACCGCTGCGGAGCTTTTCATGTGTGATGAAAAGGCCTTGGAAGACTCTCTCTGCAAACGTGTAATCGTCACTCGTGATGAGAATATCACAAAGTGGCTGGATCCAACTGCTGCAGCCCTTAGCAGAGATGCTTTGGCAAAAATTGTATACTCAAGATTGTTTGACTGGCTGGTAGACAAAATTAATAATTCGATTGGACAGGATCCCGATTCGAAGTTCTTGATTGGAGTGCTGGATATCTATGGATTTGAGAGTTTCAAGACAAACAGCATGTTTTCAAGATGGAGCAAGAAGAGTATACAAAAGAGGAAATTGATTGGAGCTATATTGATTTTGTTGATAATCAAGACATCCTTGATCTCATTGAAAAGAAACCTGGTGGTATTATTGCCCTTCTGGATGAAGCATGTATGTTCCCCAGATCAACTCATGAAACATTTGCACAAAAGTTGTATCAAACATTCAAAAATCATAAACGCTTCAGCAAACCAAAATTATCCCGGAGTGACTTCACGATTGCTCATTATGCTGGTCACCTATCAAACTGATTTGTTTCTGGACAAAAATAAAGACTATGTTGTTGCTGAACACCAAGCGCTCTTGAGCGCTTCCAAATGCTTCTTTGTGTCACGTTTGTTTCCTCAATTAGCTGAAGAATCATCCAAATCTTCAAAATTCTCATCAATAGGTTCCCGTTTCAAGCTACAATTGGTATCACTGCTGGAAACTCTAAGTGCTACCGAGCCGCATTACATTCGATGTGTAAAGCCCAATAATCTTCTAAAGCCTTCTATCTTCGAGAATAAGAATATATTGCAACAATTACGATGTGGGGGAGTCATGGAGGCAATTAGGATAAGTTGTGCCGGTTTTCCAACGAGGAAAACATTTGACGAATTTGTTGACCGATTTGGACTCCTTGCACCTGAAGTTTTGGATGGGAGCTCTGATGAAGTGACTGCTTGCAAGAGGCTTCTAGAGAAGGTCGGACTTAAAGGATACCAGATTGGCAAGACAAAGGTGTTTCTTAGAGCCGGTCAGATGGCTGAACTCGATGCACTCAGGACTGAGATCTTAGGGAGATCAGCAAGTATTATTCAGCGGAAAGTTCGTTCTTATCTGGCTCGTAGAAGCTTTGTATCGCTTCGGAGGTCAGCTATACATCTGCAGTCTGCATGTAGAGGACAACTCGCTCGAGAAGTATTTGAGGGCATGAGGAGAGAAGCTTCTTCTTTAATGATTCAAAGGAATTTGCGCATGCATCTCTGCAGGAAAGCTTACAAAGAAAAGTACTCGTCAGCCGTTTCTATTCAAACTGGAATGCGTGGAATGGCTGCTCGCAATGAGCTGCGCTTCAGACGGCGATCTAAAGCAGCAATTATTATCCAGAGCTATTGTCGACGATATTTGGCTCAGCTGCACTATAAGAGGTTAAAGAAAGCAGCAATCACCACTCAATCGATATGGAGAGGAAGAGTTGCTCGAAAGGAACTACGGAAGCTGAAGATGGCTGCAAGGGAAACAGGAGCTCTTCAAGCTGCGAAAAATAAATTGGAAAAGCAAGTCGAAGAATTAACATGGAGACTGCAGTTGGAGAAGCGTATGAGGGCTGACTTGGAAGAAGCTAAGACCCAAGAAAATGAGAAGCTGCAATCTGCTTTGCAAGATATGCAGCTTCAGTTGAAAGAAACAAAAGCAATGTTTGAGAAGGAACGTGAAGCTGCGAAAAAGGCGGCGGATATTGTTCCGATTGTGAAAGAGGTTCCAGCTTTGGTAAGTTCACTGGAAAAGAAAATTGATGAAACAGAGAAAAAGTACGAAGAGGCGAACAGAGTTAGTGAAGAAAGGTTGAAGCAAGCATCAGACGCTGAAACAAAAATCATTCAATTAAAGACTGCTATGCAGAGGCTTGAAGAAAAATTCTCAAATATTGAATCTGAAAACCAGCTTCTTCGGCAGCAGACCTTCATGAAGACACCAGTAAAAAAAATGGCTGACCATCTTCCTATTGCAGCAGCAGAGGAGCAATTTGTAACGCCCGTGAAATCACTGAAGAGAATTAGCTCAGAATCTGAAATTAAGTTGAGTAGATCACATTTTGAACATCAACAAGAGAATGTTGATGCTCTTATCAGTTGTGTTATGAACAACACTGGGTTTAGTAATGGGAAGCCTATAGCTGCATTTACCATTTATAAATGTCTTCTTCACTGGAAATCTTTTGAAGCGGAAAAAACAAGCGTATTTGATCGACTAATTCAGATGATCGGATCCGCAATAGAGAATCAAGATAACAATGATCATCTAGCCTATTGGTTGTCGAACACATCCGCGCTACTGTTCTTGCTTCAACGAAGCTTGAAAGCTGCCGGCGCTCCCCGAAAACCGCCACCGTCAACGTCCTTATTTGGAAGGATGACTATGGGCTTCCGTTCGTCTCCTTCTTCCAACAGTCTTGGATCTGCACTTAAGGTAGTTCGCCAAGTGGATGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGCTGACAGCGTATGTCGAAAAAATATTCGGAATTATCCGAGATAACTTGAAGAAGGAGTTGACAACATTGCTTTCGTCGTGTATCCAAGCACCAAGAACATCGAAAGGAGTATTACGATCGGGACGATCATTTGGGAAAGATACTCAAACTAATTACTGGCTGAGCATCATAGAACACCTCAACTTGCTTCTCTGTACATTGAAAGAAAATTTTGTTCCCCAAATTCTTATCCAGAATGTCTTTGTTCAAAACTTTTCGTATATTAATGTTCAACTCTTCAATAGCCTCCTTCTCCGTCGAGAATGTTGTACGTTCAGCAATGGGGAATACGTTAAGTCCGGGTTAGCCGAGTTGGAGCTCTGGTGTTGCCAGGCAAAGGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGATCCTGAGTGTCCAGCAGCTTTATAGAATATGTACGCTCTACTGGGACGACAACTACAACACTCGAAGCGTATCGCCCGGAGTAATATCCAGCATGAGAGTGCTCATGACAGAGGATTCCAACAATGCAGTTAGCAGTTCCTTCCTATTAGATGACAATTCCAGCATCCCCTTCTCGGTCGAAGACCTCTCGAACTCGCTGCAAGAGAAAGATTTCTCCGGCGTGAAGCCTGCCGACGAACTACTCGAGAACCCTGCCTTCCAATTTTTACACGAGTAA 4137 42.42 YLQASTTGLVGVGSLVWLEDSEEAWIEGEVLEVRGEEIKVLCTSGKTVAVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTRLPHLYDSYMMAQYKGAGFGELSPHPFAIADAAYRLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAATEGRSVEQQVLESNPVLEAFGNAKTDVKKYKLENPRSFHYLNQSNCYELDEIDDAKEYIATRKAMEVVGISSDEQDGIFRVVAAILHLGNIEFAKGKEADSSVPKDEKSWFHLRTAAELFMCDEKALEDSLCKRVIVTRDENITKWLDPTAAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSMFSRWSKKSIQKRKLIGAILILLIIKTSLISLKRNLVVLLPFWMKHVCSPDQLMKHLHKSCIKHSKIINASANQNYPGVTSRLLIMLVTYQTDLFLDKNKDYVVAEHQALLSASKCFFVSRLFPQLAEESSKSSKFSSIGSRFKLQLVSLLETLSATEPHYIRCVKPNNLLKPSIFENKNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVTACKRLLEKVGLKGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVSLRRSAIHLQSACRGQLAREVFEGMRREASSLMIQRNLRMHLCRKAYKEKYSSAVSIQTGMRGMAARNELRFRRRSKAAIIIQSYCRRYLAQLHYKRLKKAAITTQSIWRGRVARKELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSALQDMQLQLKETKAMFEKEREAAKKAADIVPIVKEVPALVSSLEKKIDETEKKYEEANRVSEERLKQASDAETKIIQLKTAMQRLEEKFSNIESENQLLRQQTFMKTPVKKMADHLPIAAAEEQFVTPVKSLKRISSESEIKLSRSHFEHQQENVDALISCVMNNTGFSNGKPIAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHLAYWLSNTSALLFLLQRSLKAAGAPRKPPPSTSLFGRMTMGFRSSPSSNSLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTTLLSSCIQAPRTSKGVLRSGRSFGKDTQTNYWLSIIEHLNLLLCTLKENFVPQILIQNVFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLILSVQQLYRICTLYWDDNYNTRSVSPGVISSMRVLMTEDSNNAVSSSFLLDDNSSIPFSVEDLSNSLQEKDFSGVKPADELLENPAFQFLHE 1378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9542854 9555438 - Cp4.1LG12g10200.1 Cpe12g01163 479160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g01163 1378 Gene3D - 439 545 - -
Cpe12g01163 1378 Coils Coil 799 872 - -
Cpe12g01163 1378 Coils Coil 890 952 - -
Cpe12g01163 1378 Pfam DIL domain 1219 1291 IPR002710 -
Cpe12g01163 1378 ProSiteProfiles Dilute domain profile. 1048 1344 IPR002710 -
Cpe12g01163 1378 Pfam Myosin N-terminal SH3-like domain 13 54 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cpe12g01163 1378 CDD MyosinXI_CBD 999 1347 IPR037975 GO:0007015
Cpe12g01163 1378 PRINTS Myosin heavy chain signature 95 114 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01163 1378 PRINTS Myosin heavy chain signature 152 177 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01163 1378 PRINTS Myosin heavy chain signature 199 226 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01163 1378 PANTHER MYOSIN 476 1376 - -
Cpe12g01163 1378 SMART iq_5 704 726 IPR000048 GO:0005515
Cpe12g01163 1378 SMART iq_5 752 774 IPR000048 GO:0005515
Cpe12g01163 1378 SMART iq_5 775 797 IPR000048 GO:0005515
Cpe12g01163 1378 SMART iq_5 679 701 IPR000048 GO:0005515
Cpe12g01163 1378 SMART iq_5 656 678 IPR000048 GO:0005515
Cpe12g01163 1378 SMART iq_5 727 749 IPR000048 GO:0005515
Cpe12g01163 1378 ProSiteProfiles IQ motif profile. 659 683 IPR000048 GO:0005515
Cpe12g01163 1378 PANTHER MYOSIN 211 389 - -
Cpe12g01163 1378 Gene3D - 212 253 - -
Cpe12g01163 1378 SMART DIL_2 1218 1306 IPR002710 -
Cpe12g01163 1378 ProSiteProfiles IQ motif profile. 728 757 IPR000048 GO:0005515
Cpe12g01163 1378 ProSiteProfiles IQ motif profile. 753 782 IPR000048 GO:0005515
Cpe12g01163 1378 Pfam Myosin head (motor domain) 67 209 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01163 1378 Pfam Myosin head (motor domain) 442 642 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01163 1378 Pfam Myosin head (motor domain) 212 389 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01163 1378 Gene3D Kinesin motor domain 15 211 IPR036961 -
Cpe12g01163 1378 PANTHER MYOSIN-14 8 209 - -
Cpe12g01163 1378 PANTHER MYOSIN-14 211 389 - -
Cpe12g01163 1378 ProSiteProfiles IQ motif profile. 680 709 IPR000048 GO:0005515
Cpe12g01163 1378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 707 IPR027417 -
Cpe12g01163 1378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 805 IPR027417 -
Cpe12g01163 1378 SMART MYSc_2a 60 655 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01163 1378 Gene3D - 589 653 - -
Cpe12g01163 1378 PANTHER MYOSIN-14 476 1376 - -
Cpe12g01163 1378 ProSiteProfiles IQ motif profile. 776 805 IPR000048 GO:0005515
Cpe12g01163 1378 PANTHER MYOSIN 8 209 - -
Cpe12g01163 1378 Pfam IQ calmodulin-binding motif 755 774 IPR000048 GO:0005515
Cpe12g01163 1378 Pfam IQ calmodulin-binding motif 659 677 IPR000048 GO:0005515
Cpe12g01163 1378 Pfam IQ calmodulin-binding motif 778 797 IPR000048 GO:0005515
Cpe12g01163 1378 Pfam IQ calmodulin-binding motif 708 726 IPR000048 GO:0005515
Cpe12g01163 1378 Pfam IQ calmodulin-binding motif 681 698 IPR000048 GO:0005515
Cpe12g01163 1378 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 11 60 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cpe12g01163 1378 ProSiteProfiles Myosin motor domain profile. 65 654 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe12g01163 1378 ProSiteProfiles IQ motif profile. 705 734 IPR000048 GO:0005515
Cpe12g01163 1378 Gene3D - 657 706 - -
Cpe12g01163 1378 Gene3D - 707 754 - -
Cpe12g01163 1378 Gene3D - 755 804 - -
Cpe12g01163 1378 Gene3D Kinesin motor domain 546 584 IPR036961 -
Cpe12g01163 1378 Gene3D Kinesin motor domain 366 381 IPR036961 -
Cpe12g01163 1378 Gene3D Myosin VI head, motor domain, U50 subdomain 490 523 - -
Cpe12g01163 1378 Gene3D Myosin VI head, motor domain, U50 subdomain 255 365 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g01163 Cpe17g00969 CCT
Cpe12g01163 Cpe17g00969 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01163 Cpe-Chr12:9542854 Cpe17g00648 Cpe-Chr17:5286872 0 dispersed
Cpe20g00372 Cpe-Chr20:2091595 Cpe12g01163 Cpe-Chr12:9542854 2.23E-09 dispersed
Cpe12g01163 Cpe-Chr12:9542854 Cpe17g00969 Cpe-Chr17:7393051 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g01163 K10357 - csv:101208630 2240.69