Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g01174 ATGGCCGGCTTGGTCACCGGTTCCCAACACTATCCCCACGTAGCCAATGAGAGTCATCGTGGGCCTGCATCATCGATGAAAACGTGTCGAGTTTGTGGTGACGAAATTGGACTCAAAGATGATGGTAAAGTATTTGTGGCATGTCTTGTGTGTAATTTCCCTGTTTGTCGTCCTTGTTACGAGTACGAAAGGAGCGAAGGCAACAAGTGTTGTCCCCAATGCAATGCTCGCTACAAGCGTCATAAAGGCTCGCCTAGAGTCATTGGTGACGACGAAGAAGCTGACGATGCAGACGATTTCGACGATGAATTCCCCATCAAACACCACAGTAATGATGAGTTCGAATCAAAACAGCCCAATCCTTCGGAACACGATAACTACAAGCAGCAGAATTGGCATCAAAACGTCCATAGTTCCTTCTCAGTTGCAGGCAGTGTGAACGGGAAGGAGATGGAAGGCGAGAAGGAAAGTTATGGAAATGCTGAATGGAAGGAGAGGATAGATAAGTGGAAAGTGAGGCAAGAAAAGAGAGGTTTGGGGAACAAAGATGATGATGGAAGTAACCATGATCAACCCCTAGAAGATGACTTCTTATTGGCAGAAGCCCGGCAACCACTGTGGCGGAAAGTTCCAATATCGTCGAGCAAAATCAGTCCATATCGGATTGTCATAGTCCTCCGCCTCGTAATTCTTGCCTTCTTCTTCCGCTTTCGGATCTTAACTCCGGCCTACGACGCATTCCCCTTGTGGCTCATCTCCGTCATATGCGAAATCTGGTTCGGCTTCTCCTGGATTCTGGATCAGTTCCCCAAATGGGCTCCCATCAACCGGGAGACCTACCTGGACCGGCTGTCCATGAGATTCGAGCGGGAGGGGGAGCCCAACAGCCTGGCTCCGATCGACTTCTTCGTCAGCTCGGTGGACCCTCTCAAGGAGCCGCCCATCATAACCGCGAACACGGTGCTGTCCATCCTGGCGGTGGACTATCCGGTGGACAAGGTGAGCTGCTACGTGTCGGATGACGGAGCGTCGATGCTGCTGTTTGACGCGCTGGCGGAGACGGCGGAGTTTGCTCGGAGATGGGTTCCGTTCTGCAAGAAGTTCAGCGTCGAGCCTAGGGCTCCGGAGTTCTACTTCTCACAGAAGATGGATTACTTGAAGGATAAGGTGCTGCCCAGTTTTGTGAAGGAGAGGAGGGCAATGAAGAGGGAATACGAAGAGTTCAAGGTGAGGATCAACGCGTTGGTGGCTAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGCACTCCATGGCCTGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGAAGTGAAGGTGCACTTGATGTGGATGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAGCGCCCTGGATATCAGCACCACAAGAAAGCTGGTGCTATGAATGCTCTGGTTCGAGTCTCTGCAGTCCTCACTAATGCACCATTCATCTTAAATCTGGATTGTGATCACTACGTCAATAATAGCAAAGCTGTAAGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTATGCTATATTCAGTTTCCTCAAAGATTTGATGGTATTGATCGTCACGACAGATATGCTAATCGGAATATTGTGTTCTTTGATATCAACATGCGAGGACTAGATGGAATACAAGGCCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATATGGATATGAACCACCAGTCTCTGAGAAAAGGCCGAAGATGACATGCGATTGCTGGCCTTCCTGGTGTTTCTGCTGCTGCTGCGGTGGTTCAAGGAAGTCGAAGACGAAGAAGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCTCAAGGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGGGTCTGGACCAGTTTTTGATCTTGAGGAGATCGAAGAAGGATTTGAAGGTTACGACGAGTTGGAGAAGTCGTCACTTATGTCGCAAAAGAATTTCGAGAAAAGATTTGGACAGTCGCCTGTTTTCATCGCTTCCACTCTTAAGGAAGACGGAGGTCTTCCAGAAGGAATGAACAGCACATCACTCGTTAAAGAAGCCATCCATGTGATAAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTATGGTTCGGTCACTGAGGATATTTTGACAGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTGTACTGCATGCCACAGAGACCAGCTTTTAAGGGTTCGGCTCCGATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCATTGGGTTCTGTTGAAATCTTCCTCAGTCGACACTGCCCGCTGTGGTATGCTTATGGAGGAAAGCTAAAATGGCTCGAGAGGCTTGCCTACATCAACACCATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCTGCTGTTTGTCTTCTCACTGGAAAATTCATTATCCCCACTTTGACGAACTTAGCTAGTGTCTGGTTCATGGCTTTGTTTCTTTCCATCATTGCGACGGCTGTACTGGAGCTTCGATGGAGTGAAGTGAGTATCGAGGACTTGTGGCGTAATGAGCAATTCTGGGTAATTGGTGGTGTCTCTGCACATCTTTTTGCAGTGTTCCAAGGCCTGCTCAAGGTCCTTGGTGGTGTAGACACCAACTTCACAGTTACAGCAAAAGCAGCCGACGACACCGAGTTTGGAGAACTCTATCTTTTCAAGTGGACAACCCTCCTTATCCCGCCCACCACTCTCATAATCTTGAACATGGTGGGAGTGGTTGCTGGAGTTTCAGATGCTATTAACAATGGCTACGGTTCATGGGGTCCTCTGTTTGGAAAGCTATTCTTTGCTTTCTGGGTCATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAGACAAAACAGGACGCCCACCATTGTAGTTCTTTGGTCCGTGCTTCTTGCATCCATTTTCTCACTGGTTTGGGTGCGAATTGATCCCTTCCTGCCCAAGCAAACTGGTCCAGTCCTCAAACAATGTGGAGTCGATTGCTAG 3132 48.02 MAGLVTGSQHYPHVANESHRGPASSMKTCRVCGDEIGLKDDGKVFVACLVCNFPVCRPCYEYERSEGNKCCPQCNARYKRHKGSPRVIGDDEEADDADDFDDEFPIKHHSNDEFESKQPNPSEHDNYKQQNWHQNVHSSFSVAGSVNGKEMEGEKESYGNAEWKERIDKWKVRQEKRGLGNKDDDGSNHDQPLEDDFLLAEARQPLWRKVPISSSKISPYRIVIVLRLVILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFEREGEPNSLAPIDFFVSSVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDALAETAEFARRWVPFCKKFSVEPRAPEFYFSQKMDYLKDKVLPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVDGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYIQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPVSEKRPKMTCDCWPSWCFCCCCGGSRKSKTKKKGERGLLGGLFSRKKKMMGKSYVRKGSGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGMNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPQRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFLSIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9650072 9654816 + Cp4.1LG12g10230.1 Cpe12g01174 479171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g01174 1043 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 24 113 - -
Cpe12g01174 1043 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 152 1043 - -
Cpe12g01174 1043 SUPERFAMILY RING/U-box 22 99 - -
Cpe12g01174 1043 MobiDBLite consensus disorder prediction 82 129 - -
Cpe12g01174 1043 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 411 592 IPR029044 -
Cpe12g01174 1043 Coils Coil 398 418 - -
Cpe12g01174 1043 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 24 113 - -
Cpe12g01174 1043 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 152 1043 - -
Cpe12g01174 1043 MobiDBLite consensus disorder prediction 1 23 - -
Cpe12g01174 1043 Pfam Zinc-binding RING-finger 25 95 IPR027934 -
Cpe12g01174 1043 CDD mRING-HC-C4C4_CesA_plant 27 77 - -
Cpe12g01174 1043 SUPERFAMILY Nucleotide-diphospho-sugar transferases 314 862 IPR029044 -
Cpe12g01174 1043 Pfam Cellulose synthase 300 1036 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cpe12g01174 1043 MobiDBLite consensus disorder prediction 101 122 - -
Cpe12g01174 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 102 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01174 Cpe-Chr12:9650072 Cpe18g00576 Cpe-Chr18:6213170 0 dispersed
Cpe12g01174 Cpe-Chr12:9650072 Cpe06g00347 Cpe-Chr6:1929692 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g01174 K10999 - csv:101205733 1970.67