Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00023 ATGGCTGTCAATTCGTCGACCCATCTCGCATCTCCGCCGCTTCGTTCGCTGCCTCGTTCCTCCTTCGCTTTCTTTTCTCGCATCTTCTTGCACCCTGTTTCGCCCACTGGCTTCCCTAGGCGGAGCCTCGTCTCAGTTCGTGCTCAGGCGCCGACTCCCGATGGCTATGGATCCAAGCAGCCGCTCAGTTTGGGGGAATCTGGACCTGTATTCGAGTCCACTGGTTCACCGTCGTCGTCATCGGTTATTGATTTCCTTACATTGTGCCATCGGCTTAAGACTACGAAGAGAAAGGGCTGGATCAATCATGGAATAAATGGTCCTGAATCAATTGCTGATCATATGTACCGCATGGCTTTGATGAGTTTGATAGCCGGTGATCTTCCAGGAGTGAATAGAGAAAGGTGTATCAAGATAGCTCTTGTGCATGATATTGCTGAAGCTATTGTTGGAGATATTACGCCATCTGATGGTGTGCCGAAAGAAGAAAAGAGCAGAAGAGAGTCAGCAGCTTTAAATGAAATGTGCCAACTTCTTGGTGGAGGCATGAGAGCTGAAGAGATCAAAGAACTTTGGACCGAGTACGAAAACAATTCTTCATTGGAGGCTAATCTTGTGAAGGACTTCGATAAAGTATGA 639 47.89 MAVNSSTHLASPPLRSLPRSSFAFFSRIFLHPVSPTGFPRRSLVSVRAQAPTPDGYGSKQPLSLGESGPVFESTGSPSSSSVIDFLTLCHRLKTTKRKGWINHGINGPESIADHMYRMALMSLIAGDLPGVNRERCIKIALVHDIAEAIVGDITPSDGVPKEEKSRRESAALNEMCQLLGGGMRAEEIKELWTEYENNSSLEANLVKDFDKV 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 200014 203297 + Cp4.1LG13g00230.1 Cpe13g00023 479221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00023 212 MobiDBLite consensus disorder prediction 49 78 - -
Cpe13g00023 212 ProSiteProfiles HD domain profile. 111 212 IPR006674 -
Cpe13g00023 212 SUPERFAMILY HD-domain/PDEase-like 80 212 - -
Cpe13g00023 212 Pfam HD domain 89 212 IPR006674 -
Cpe13g00023 212 Gene3D Hypothetical protein af1432 72 212 - -
Cpe13g00023 212 PANTHER UNCHARACTERIZED 1 212 IPR039356 GO:0002953
Cpe13g00023 212 PANTHER METAL-DEPENDENT PHOSPHOHYDROLASE 1 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00023 K07023 YGK1, HDDC2; 5'-deoxynucleotidase [EC:3.1.3.89] - csv:101206032 365.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00879 Cpe-Chr1:5165836 Cpe13g00023 Cpe-Chr13:200014 5.79E-96 dispersed
Cpe07g00691 Cpe-Chr7:5786739 Cpe13g00023 Cpe-Chr13:200014 1.77E-58 dispersed
Cpe13g00023 Cpe-Chr13:200014 Cpe11g00821 Cpe-Chr11:6681717 4.97E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0488 Cone9ag0500 . . . . . Blo11g00818 Bda07g01514 . Bpe11g01677 . . . . . . . . . . Cpe13g00023 . Bhi12g01430 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001138 3 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 1 2 3 6 4 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00023 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0