Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00026 ATGATGCCACCGGAACAAGATACAACCGCCGCCGCCCCAACCACTCCAACCTCCCATCCCCACCCCGACGTCCTCATCCACGCCGTCCCCTCCGCCACCGACACATTCTCCATTCTCCGTCATTCCCTCTTCCCTCTTACCCTCAAGTTCGAAGACATCTCCTACACCATCAAAACCCATTCCACTAAAACCAGCGGCTGTTTATGGAGGAATCACTCCCAACCCAATACTACACGCACCATTTTGAATGGTGTTAGCGGCGTGGAGTTGTCACAAGACGACAAGGTTGCGCAGGCGGAGATCATCATTGCGGAGCTCGGTCTCACTCGCTGCCGGAATAGTATAATCGGTGGGGGGCTTCTCCGGGGGATCTCTGGCGGGGAGAGGAAACGGGTTAGTATTGGTCACGAGATGATTGTGAACCCCAGCTTGCTTTTCTTGGATGAGCCTACTTCTGGGTTGGACTCCACCACGGCCCAGCGGATTGTCGCTACCTTGAGGGGACTGGCTCGTGGCGGTCGGACTCTGGTTATGACCATTCATCAGCCTTCGAGTCGGTTGTATAGGATGTTTGATAAGGTGCTGGTGTTGTCCGATGGCTGCCCTATTTACAGCGGCGACGCTGGTCGAGTCATGGGCTATTTTGAGTCCATTGGATATGTTCCTCCCTTCAATCTCATGAACCCAGCTGATTTTCTCCTCGATCTTGCCAATGGCATAGCGCCAGATTCAGCTCGCGAAGATCAAGTGGACCATTTCCATGGCGGATTGGACACACAAGACGATCAAAATTCCATCAAACACTCTCTGATTGCTTCATTCAGAAAGAACATTTACCCTGAAATCAAAGCAGAGATTCTTGCCAAAACGAAGATCTCCACGGTTGATTCAAGAACGGATTCCCCACAAGGAAGAGAAAGTCAATGGACGACGAGCTGGTGGGAGCAGTTTAGGATATTACTGAAAAGGGGATTAAGAGAAAGGCGACACGAATCGTATTCTGGGCTGAGGATTTTCCAAGTTATGTCGGTTTCGTTTCTTTCAGGGCTTTTATGGTGGCATTCGGATCCTTCGCATATACAGGATCAAGTTGGTTTAATCTTCTTCTTCTCCATCTTCTGGGGGTTCTTCCCACTGTTCAGCGCCATCTTCGCATTCCCACAAGAGCGGCCAATGCTGAACAAAGAGCGCTCCTCTGGGATGTACCGTCTGTCCTCATATTACATGGCTAGAACAGCAGGGGATTTGCCAATGGAGCTGGTTCTTCCCACCATTTTCGTGACAGTGACATACTGGATGGGGGGTTTGAAGCCATCACTGCTCCCATTTCTGCTGACCCTTTTGAGTGTTCTGCTAAACGTGCTGGTTTCGCAGGGTCTAGGCCTGGCCCTAGGCGCGATTCTGATGGAGGTGAAGCAGGCTACTACACTGGCGTCCGTTACCATGCTGGTGTTTCTCCTGGCGGGTGGGTATTACATTCAGCACATTCCTCCATTTATCTCGTGGCTTAAGTATGCGTCCTTCAGCCATTACTGCTACAGGGTTCTGGTGGGGATTCAGTATAATGTAAATGAGGTGTACCCCTGTGGGTTTGGGGTGCAGCGTTACTGCAAGGTGGGGGACTTTCCTGCTGTTAAGTGCTTGGGGATTGGGAATCCGTGGGGTGATGTGGCTGCTTTGGTGCTCATGTTGGTTGGGTATAGGGTTTTGGCTTTTCTTGCTTTGAAGATGGGACAGCCTTACTGA 1746 51.09 MMPPEQDTTAAAPTTPTSHPHPDVLIHAVPSATDTFSILRHSLFPLTLKFEDISYTIKTHSTKTSGCLWRNHSQPNTTRTILNGVSGVELSQDDKVAQAEIIIAELGLTRCRNSIIGGGLLRGISGGERKRVSIGHEMIVNPSLLFLDEPTSGLDSTTAQRIVATLRGLARGGRTLVMTIHQPSSRLYRMFDKVLVLSDGCPIYSGDAGRVMGYFESIGYVPPFNLMNPADFLLDLANGIAPDSAREDQVDHFHGGLDTQDDQNSIKHSLIASFRKNIYPEIKAEILAKTKISTVDSRTDSPQGRESQWTTSWWEQFRILLKRGLRERRHESYSGLRIFQVMSVSFLSGLLWWHSDPSHIQDQVGLIFFFSIFWGFFPLFSAIFAFPQERPMLNKERSSGMYRLSSYYMARTAGDLPMELVLPTIFVTVTYWMGGLKPSLLPFLLTLLSVLLNVLVSQGLGLALGAILMEVKQATTLASVTMLVFLLAGGYYIQHIPPFISWLKYASFSHYCYRVLVGIQYNVNEVYPCGFGVQRYCKVGDFPAVKCLGIGNPWGDVAALVLMLVGYRVLAFLALKMGQPY 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 215796 218549 - Cp4.1LG13g00290.1 Cpe13g00026 479224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00026 581 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 2 224 IPR003439 GO:0005524
Cpe13g00026 581 Pfam ABC-2 type transporter 315 521 IPR013525 GO:0016020|GO:0140359
Cpe13g00026 581 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 28 88 - -
Cpe13g00026 581 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 89 577 - -
Cpe13g00026 581 Pfam ABC transporter 51 152 IPR003439 GO:0005524
Cpe13g00026 581 Gene3D - 40 219 IPR027417 -
Cpe13g00026 581 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 28 88 - -
Cpe13g00026 581 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 89 577 - -
Cpe13g00026 581 MobiDBLite consensus disorder prediction 1 22 - -
Cpe13g00026 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 226 IPR027417 -
Cpe13g00026 581 Pfam ABC-2 type transporter 181 246 IPR043926 GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00026 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101209031 792.341
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01375 Cpe13g00026 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00026 Cpe-Chr13:215796 Cpe14g00425 Cpe-Chr14:2654343 0 dispersed
Cpe01g01375 Cpe-Chr1:8263886 Cpe13g00026 Cpe-Chr13:215796 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g240 . Blo16g01044 . . Bpe13g01320 . . . Cmo04g01619 . . . Car04g01598 . . . Cpe01g01375 . . . . . . . . . . . . . . Cone13ag0868 . Cone6ag0480 . . . . . . . . . . . . Bma06g00780 . . . . Cma15g01421 . . Cpe13g00026 . Bhi12g01423 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00026 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0