Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00027 ATGACGGACACTACTGACGATATCGCCGAGGAAATCTCCTTCCAGAGCTTCGATGATGACTGTAAATTGCTTGGCAACCTTCTTCACGACGTCTTGCAGCGGGAAGTTGGGAGCCTATTCATGGAGAAAGTTGAACGAACTCGAGTCCTCGCTCAGAGCGCTTGCAATATGAGGATCGCGGGCATCGAGGATACGGCAGACATGATTGAGAAGCAGCTTGCATCAGAGTTGTCGAAAATGACTTTAGAGGAAGCCTTCTCTTTGGCTCGTGCATTCAGCCATTCTCTCAATTTGATGGGGATTGCAGAAACTCACCACATGGTTCGTAAGTCGAGAAATCTTGTACTTCTATCAAGATCCTGCGATGAAGTTTTTAATCAGCTTGTGCAGGGCGGAGTTTCTACTGACGAGCTTTACGACAGCGTTTGCAAGCAGGAGGTTGAAATTGTTCTTACAGCACATCCAACTCAAATTAATCGTCGAACTTTGCAGTACAAACATCTTCGCATTGCACATCTATTGGACTACAATGACAGACCTGACCTTAGTCCTGAAGATCGGGAAATGCTAATTGATGATCTGGTAAGAGAGATAACTTCAATATGGCAGACAGATGAACTTAGACGCCACAAGCCCACGCCAGTTGATGAAGCTAGGGCTGGTTTGAGCATTGTGGAACAGTCCCTGTGGAAAGCTGTCCCGTATTATTTACGTCGACTCAGCAATGCCTTAAAGAAGCACACTGGAAGGTCGCTTCCTCTGACTTGCACACCAATAAAATTTGGGTCTTGGATGGGAGGCGATAGGGATGGAAATCCGAATGTCACAGCAAAGGTCACAAGAGAAGTCTCTCTTTTGTCTAGGTGGATGGCTATTGATCTATACATTCGAGAGCTTGATAGCTTGCAATTTGAACTTTCCATGAACCGATGCAGCGATAGATTATACAGACTGGCACATGAAATTCTTGAAAAAGATGCTGTATCTGAAGATGGACACGAGACCTGGAATCAGTCTTCGAGCAAAAGTGAACCGAAGAATCAGGGCCATCAAGCTGCTGCACTTCCAAGACAACTTCCACTTAGGGCCGATCTGCCTTCATGCACGGATTGCAATGATGGTGAATCCAGGTATTCTAGAGTAGAATTTCCGAGGACTGATCATCCATCATCAAATAATGAGGAAACTTCGGTTCGAAATACACATGCATCCTTATCAAATGGAACTTCACCTAGTGCAAGTGCATTTCAGTCCAATTCTTTGTCTCGTACTGCCTCTTTCAACTCAACTCAACTCCTTGCTCAGAGGAAACTGTTCGCAGAATCTCAGATTGGGAGGTCGAGTTTTCAGAAGCTTTTAGAACCAAAGCTTCCTGTACGTCCTGGAATTGCACCCTACCGCGTTGTGTTGGGTAGTGTAAAAGACAAGGAATCTGGTAGACACGCTGACACTCTGGACGCCATTACAACGTATTTGGACATGGGTTCATATAGTGACTGGGATGAAGAAAGGAAGTTGGAATTTCTAACAAGAGAGCTGAAGGGCAAACGACCACTGGTTCCTCCAACTATTGAGGTTCCTCCTGATGTTCAAGAAGTTTTGAACACCTTTCGTGTTGCTGCTGAGCTAGGGAGTGAATCACTTGGTGCTTATGTGATCTCTATGGCCTCAAATGCAAGTGACGTCCTCGCCGTAGAACTTCTGCAGAAAGATGCACGACTTTCAGTTAGTGGCGAGTTAGGACGACCATGTCCTGGTGGAACGTTGCGAGTGGTTCCTCTGTTTGAAACTGTGGACGACTTGAGGAAAGCAGGATCATCGATCAGGAAACTGTTATCTATTGATTGGTACCGAGAACACATTATAAGGAACCATAATGGGCATCAAGAGGTCATGGTAGGTTATTCTGATTCTGGCAAAGATGCTGGGCGCTTCACTGCTGCATGGGAACTTTACAAAGCTCAAGAAGATGTTGTGGCTGCATGCAACGAGTATGGTATTAAAGTTACCCTGTTCCATGGGCGTGGAGGGAGCGTTGGTCGTGGGGGTGGGCCAACGTATCTGGCCATTCAATCCCAGCCTCCAGGTTCGGTAATGGGTACTTTACGATCAACCGAACAAGGGGAGATGGTGCAGGCCAAGTTCGGGTTGCCTCAGACTGCTGTTAGACAGCTAGAGATATATACCACGGCCGTACTCCTTTCAACCCTACGTCCACCACTTCCACCTCGAGAAGCAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGTGAGAATTACCGGAGCATGGTATATGAAAATCCAGAATTCATTTCTTACTTCAATGAAGCCACTCCTCAGGCGGAGCTTGGCTTCCTTAACATTGGAAGCCGCCCAACAAGGAGAAAGACCTCTGTTGGTATCGGGCATCTTCGAGCTATACCATGGGTTTTTGCTTGGACACAAACTAGATCTGTTCTTCCAGCTTGGCTTGGGGTTGGGGCAGGTTTAAAGGGTGTATGTGAAAAGGGTCACACTCAAGACTTGAAAGCAATGTACTCAGAATGGCCTTTCTTCCAGAGCACCCTAGACCTTATAGAGATGGTTCTAGGAAAAGCTGATACTCACATCGCAAAGCATTATGATGAAGTCCTAGTCTCGGAGAGTCGACGTGAAATCGGCTCTATATTGAGGAAGGAACTGGTGGAGACTGAGAAATATGTTTTGGTAGTTAGCAGGCACGGGAAACTATCTGAGAATAATCGGAGTTTGAGAAAGCTGATCGAACGCAGACTCCATTATCTTAATCCTCTGAACCTGCTGCAAGTTGAGATATTAAAAAGGCTGAGATGTGATGCAGAGAACAAAAAACTGAGAGATGCATTGCTTATTACTATTAATGGGATCGCAGCTGGAATGAGGAACACAGGTTAA 2922 45.79 MTDTTDDIAEEISFQSFDDDCKLLGNLLHDVLQREVGSLFMEKVERTRVLAQSACNMRIAGIEDTADMIEKQLASELSKMTLEEAFSLARAFSHSLNLMGIAETHHMVRKSRNLVLLSRSCDEVFNQLVQGGVSTDELYDSVCKQEVEIVLTAHPTQINRRTLQYKHLRIAHLLDYNDRPDLSPEDREMLIDDLVREITSIWQTDELRRHKPTPVDEARAGLSIVEQSLWKAVPYYLRRLSNALKKHTGRSLPLTCTPIKFGSWMGGDRDGNPNVTAKVTREVSLLSRWMAIDLYIRELDSLQFELSMNRCSDRLYRLAHEILEKDAVSEDGHETWNQSSSKSEPKNQGHQAAALPRQLPLRADLPSCTDCNDGESRYSRVEFPRTDHPSSNNEETSVRNTHASLSNGTSPSASAFQSNSLSRTASFNSTQLLAQRKLFAESQIGRSSFQKLLEPKLPVRPGIAPYRVVLGSVKDKESGRHADTLDAITTYLDMGSYSDWDEERKLEFLTRELKGKRPLVPPTIEVPPDVQEVLNTFRVAAELGSESLGAYVISMASNASDVLAVELLQKDARLSVSGELGRPCPGGTLRVVPLFETVDDLRKAGSSIRKLLSIDWYREHIIRNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYGIKVTLFHGRGGSVGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLSTLRPPLPPREAKWRNLMEEISKISCENYRSMVYENPEFISYFNEATPQAELGFLNIGSRPTRRKTSVGIGHLRAIPWVFAWTQTRSVLPAWLGVGAGLKGVCEKGHTQDLKAMYSEWPFFQSTLDLIEMVLGKADTHIAKHYDEVLVSESRREIGSILRKELVETEKYVLVVSRHGKLSENNRSLRKLIERRLHYLNPLNLLQVEILKRLRCDAENKKLRDALLITINGIAAGMRNTG 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 224104 235477 - Cp4.1LG13g00340.1 Cpe13g00027 479225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00027 973 Pfam Phosphoenolpyruvate carboxylase 19 338 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cpe13g00027 973 Pfam Phosphoenolpyruvate carboxylase 476 973 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cpe13g00027 973 MobiDBLite consensus disorder prediction 330 359 - -
Cpe13g00027 973 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 631 643 IPR033129 -
Cpe13g00027 973 Gene3D Phosphoenolpyruvate/pyruvate domain 289 365 - -
Cpe13g00027 973 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 476 973 - -
Cpe13g00027 973 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 8 476 - -
Cpe13g00027 973 MobiDBLite consensus disorder prediction 390 417 - -
Cpe13g00027 973 MobiDBLite consensus disorder prediction 333 348 - -
Cpe13g00027 973 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 476 973 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cpe13g00027 973 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 8 476 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cpe13g00027 973 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cpe13g00027 973 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cpe13g00027 973 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cpe13g00027 973 PRINTS Phosphoenolpyruvate carboxylase signature 629 649 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cpe13g00027 973 PRINTS Phosphoenolpyruvate carboxylase signature 804 830 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cpe13g00027 973 PRINTS Phosphoenolpyruvate carboxylase signature 671 700 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cpe13g00027 973 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 17 973 IPR015813 GO:0003824
Cpe13g00027 973 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 973 IPR022805 GO:0006099|GO:0008964|GO:0015977
Cpe13g00027 973 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Cpe13g00027 973 MobiDBLite consensus disorder prediction 376 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00027 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] - jre:109015115 1467.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00027 Cpe-Chr13:224104 Cpe15g00836 Cpe-Chr15:8255426 1.30E-44 dispersed
Cpe13g00027 Cpe-Chr13:224104 Cpe06g00652 Cpe-Chr6:4056565 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g241 . Blo16g01045 . Bda11g01124 Bpe13g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02069 . . . . . Bda11g01124 . . . Bma06g00779 . . . . Cma15g01420 . Car15g01282 Cpe13g00027 . Bhi12g00828 . . . . . Lcy10g0852 Cla01g00567 Cam01g0590 Cec01g0582 Cco01g0606 Clacu01g0585 Cmu01g0556 Cre09g1951 Lsi09g00615 . Chy09g00939 Cme09g01467
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008238 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00027 Cpe_Chr13 FPKM 10.627521 9.902925 18.250473 17.098354 26.031614 25.753063 22.928371 16.273643 16.109512 14.387935