Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00029 ATGGATATGGCTTCAGATGCTGGTTCGAGGGCGAGTTCAGCTGCCGATTCGTACATTGGAAGCTTGATTAGTTTGACTTCCAAGAGTGAAATTAGATACGAAGGCGTACTCTACAACATCAACACCGAAGAGTCCAGTATTGGACTAAGAAATGTGAGATCATTTGGAACAGAAGGAAGAAAGAAGGATGGCCCCCAAGTTCCTCCAAGTGATAAAGTTTTTGAGTACATCTTATTCCGTGGAAGTGATATCAAGGATTTGCAGGTTAAATCTTCTCCACCTGTTCAGCCGTCAGCGCCTATAAATAATGATCCAGCAATTATTCAATCTCACTATCCCCCATCAGTTTCCACATCTACCAGCATGCATTCTGCTGTCAGTGGGTCATTACCTGATCATACTTCTCACACAGCATTTGGATTTCCTCAGTCTAATTTTCAAGGTGGTTTGCCCCCATATCAACCTGGAGGCAACTTGGGGTCATGGGGAGCTTCTCCTCCGCCTCCTCCAAGTGCAAATGGCAGTGGACTTGGGATGCCCATGTATTGGCAAGGGTATTATGGCCCACCTAATGGGCTTCCTCAGTTACACCAACAATCAATAATACGACCTCCTCCAGGTCTGTCAATACCTTCATCTCTGCAACAGTCAATGCAGTTTCCTAACATTAATGCACCTTTACCCACTGGAACTTCAAAACAACCAGAAGTTCCATCTCCCTTGCTCGCTGCTAATAGTAGTGCTCCTAACCTGACCTCCACTGTTGTGCCCCCTCCAACTTTTTCAACAGCTTTGCCTATGTTCCCTTTTACTTCTTTTTCTGAAACCTTGCCAAGTTCAGTTGCTAATAAGACAGCTGTTCCTACCCTTTCTGGAGCCCCAGTTAGTGTGAGTTTGCCCCTTGGTCCAATACTGTCTTCATTTTCCGGTGGAGATGTTAGTTCTGCCATACCACCAATCACTAATGAACCTAATGCAGTTTCTGGTCCCTCATTACTGTATCAAAATGCGTCTCAGTCAACTTCATCTGTAGTTGGAATAGCCAACTCTCGTGCTGAATCTTCTGTACCTTCTCTAGTTACCCCTGGGCAGCTGTTGCAGTCTGGTCCCGTTGCTGTGGTTTCATCTCAATCGTCACATACAGTGCATGAGGACGTGGAAGTGGTCCAGCCATTATCGTTAGAACCTTCGATGCCAGTGACAACAGAGGCTCAGCCACCAATATTACCACTACCTGTACTGTCAAGGCCCGTTCAAAAGGCAAATGGTTCTCATTTTCAGTCTCGCCACTTTTACAGAGGACGTGAAAGAGGAAGAGGATCTGGGAGTTCCCGTCCTGTTACGAAATTTACGGAAGATTTTGATTTCATAGCTATGAATGAGAAATTCAACAAGGATGAAGTGTGGGGAAATCTAGGTAAAGGCAATAAATCTCATCACAAGGATAAGGATGTGGATGGAAATGTCAGTGATGAGGAAGATGAGGAAGAAGAAGATGAGGGTGAAGTCTCACAGTCTGGGGTTAAGCCCTTGTACAACAAGGATGACTTCTTTGATTCACTCTCTTATAATGCTATTGATAATGATCCTCAAAATGGGCGGACTAGATATTCGGAGCAAGTAAAGATAGACACAGAGACTTTTGGTGATTTTTCGAGACTTTTGGTGATTTTTCGAGGTATCGAGGGGGACGAGGTGGCCGAGGTCCTGGACGTGGGGGGTATTTCCGTGGAGGATACCATGGAAGAGGATATGGCTATTATGGGAGGGGGAGGGGGCGGGGACAAGGGCGATCATCATTTAATCGTTCATAATCCAACCACTAATGATAATGAAGGATGCAAAGGGGTTTTTGAGTATGTTGGACACGTTTTCTGTTTCAGCGTATTGAAAAGACACTATTCTTAA 1908 44.97 MDMASDAGSRASSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQPSAPINNDPAIIQSHYPPSVSTSTSMHSAVSGSLPDHTSHTAFGFPQSNFQGGLPPYQPGGNLGSWGASPPPPPSANGSGLGMPMYWQGYYGPPNGLPQLHQQSIIRPPPGLSIPSSLQQSMQFPNINAPLPTGTSKQPEVPSPLLAANSSAPNLTSTVVPPPTFSTALPMFPFTSFSETLPSSVANKTAVPTLSGAPVSVSLPLGPILSSFSGGDVSSAIPPITNEPNAVSGPSLLYQNASQSTSSVVGIANSRAESSVPSLVTPGQLLQSGPVAVVSSQSSHTVHEDVEVVQPLSLEPSMPVTTEAQPPILPLPVLSRPVQKANGSHFQSRHFYRGRERGRGSGSSRPVTKFTEDFDFIAMNEKFNKDEVWGNLGKGNKSHHKDKDVDGNVSDEEDEEEEDEGEVSQSGVKPLYNKDDFFDSLSYNAIDNDPQNGRTRYSEQVKIDTETFGDFSRLLVIFRGIEGDEVAEVLDVGGISVEDTMEEDMAIMGGGGGGDKGDHHLIVHNPTTNDNEGCKGVFEYVGHVFCFSVLKRHYS 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 243805 251137 + Cp4.1LG13g00240.1 Cpe13g00029 479227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00029 635 Pfam Scd6-like Sm domain 18 91 IPR025609 -
Cpe13g00029 635 SMART FDF_2 448 552 IPR019050 -
Cpe13g00029 635 MobiDBLite consensus disorder prediction 472 487 - -
Cpe13g00029 635 ProSiteProfiles FFD box profile. 510 525 IPR025761 -
Cpe13g00029 635 PANTHER SCD6 PROTEIN-RELATED 3 563 - -
Cpe13g00029 635 MobiDBLite consensus disorder prediction 111 151 - -
Cpe13g00029 635 ProSiteProfiles TFG box profile. 532 552 IPR025768 -
Cpe13g00029 635 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 3 563 - -
Cpe13g00029 635 CDD LSm14_N 15 89 IPR025609 -
Cpe13g00029 635 Gene3D - 8 94 - -
Cpe13g00029 635 SUPERFAMILY Sm-like ribonucleoproteins 17 94 IPR010920 -
Cpe13g00029 635 MobiDBLite consensus disorder prediction 488 502 - -
Cpe13g00029 635 Pfam FDF domain 449 550 IPR019050 -
Cpe13g00029 635 SMART LSM14_2 12 112 IPR025609 -
Cpe13g00029 635 MobiDBLite consensus disorder prediction 472 511 - -
Cpe13g00029 635 ProSiteProfiles DFDF domain profile. 442 478 IPR025762 -
Cpe13g00029 635 MobiDBLite consensus disorder prediction 111 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00029 K18749 LSM14, RAP55, SCD6; protein LSM14 - csv:101215778 936.791
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01755 Cpe13g00029 CCT
Cpe09g00267 Cpe13g00029 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01755 Cpe-Chr1:12972114 Cpe13g00029 Cpe-Chr13:243805 0 dispersed
Cpe02g00579 Cpe-Chr2:3454941 Cpe13g00029 Cpe-Chr13:243805 7.59E-10 transposed
Cpe01g01371 Cpe-Chr1:8244492 Cpe13g00029 Cpe-Chr13:243805 0 wgd
Cpe13g00029 Cpe-Chr13:243805 Cpe09g00267 Cpe-Chr9:1553428 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g247 Blo01g00476 . . . . . Bma14g01693 . Cmo04g01615 Cmo18g01071 . . Car04g01593 . Sed06g1855 Cpe09g00267 Cpe01g01755 Bhi07g01381 Tan04g0909 Cmetu10g0348 Lac13g0448 Hepe10g1862 . . Cla05g02337 Cam05g2511 Cec05g2535 Cco05g2578 Clacu05g2505 Cmu05g2367 Cre05g2484 Cone13ag0863 Cone19ag0863 . . Lsi04g00298 Csa05g02074 . Cme10g00301 . Blo11g00828 . . Bpe11g01686 . . . . . . Cma04g01995 . . Car15g01281 Cpe13g00029 . Bhi12g00822 . . . . . Lcy10g0875 Cla01g00562 Cam01g0585 Cec01g0577 Cco01g0601 Clacu01g0580 Cmu01g0551 Cre09g1956 Lsi09g00611 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001922 1 2 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 1 2 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00029 Cpe_Chr13 FPKM 98.184937 103.242493 80.470261 75.692711 18.562937 17.683233 17.65015 134.56543 136.095413 119.907799