Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00031 ATGATGAACAGATTTGGTGTTCTTGTTGCTGTTTCCATTGCAGCTTATGCAATTAGGCAGCTCACAATCAGATCATGGAGCTCATTAATCTATTCAGAAAATGGAGAACACACAGAGAAGAACCTAAGACGACAGCGAAGAATGTTCCATGGCTTGGATGAAGAACAAGAAGAACAAAAGGAAGCTAATTCAATGAATGATCTTGAAGATGGTGATCATGATCATAGTTTAGATGAACTTCAAGAACATCTACCACAAAACAAAGTGGGTGAAACCCATAAGATTGAAATGGAAAGGCTGCTGAAACAAGTGATGGAATTGGAGGAGAGGAAAGTGAAGCTTGAAGGTGAACTGGTCATGTATGATGGTATCAAGAACAGTGAAATGGATATCATGGAGTTGAAGAAGCAGCTGGAGGCCAAGAATGATGATATCAATAAGAGTAATATCACAATCAGCTCTTTGCAGGCTGAGAGGAAGGAGCTACAAGAAGAGATAGTGAAGGGAGCATTGGTGAAGAAGGAACTAATGGAGGCTAAGGGAAAGATTAAGGAGCTGCAAAGGCAGATTCAGGTGGATGCAAACCAAACAAAACAACATTTGTTATTACTCAAACAACAAGTTTCCACTTTGCAGGCAAAAGAGGAAGAAGCCCTCAAGAAAGAGGTAGAACTTTATAAGAAGCTGAGAGCGGAGAAGGATTTCGAGGTCGAGATTTCGGAGCTTAAGCGGAAGAATCGAGAGCTTCAACACGAAAACCAGGAACTTACCTCTAAACTAAATGAAAGAGAGGAGGCTAAGAAGTTAAGAATTGAGAATGAGGGTCTGATAAAGCAACTTGAAGGGCTTCAGATGAACAAGTTTAGTGAAGTTGAAGAGTTAGTGTACCTTCGTTGGATCAATGCTTGCTTGAGGTATGAGCTTCGAGACAACGACGAAACACCGGCAGGCGAATCCGTTCGTTATCTCAATAAGAACTCAAGTCCAAAGTCAAAAGAGAAGGCAAAACAACTCATGTTAGAGTATGCAGGAACAGAAACAGATTCAATTGATAGTTCAAGGAGCAGAAGTAGTAGTAGTTTCAGTGAGACGCCTAATTTGATCAGAAACAACAGCGAGTCGAGTGGTGTTTTGTCGTTGCCGATGATCGGTTTGAGCCACGGACGGAAGGATCGTTTAGAAGCAGTGTTGGCTGTGAGGGCTGAAACTTTAACTCTCTCAGAAGTCATCAGATTGCAGGTTTGTTCAAGAAACTCTGTTAACTCTGTTGCAACATCATTCAAACTTATGTCTAAAACAGTTGAAGAAAGTCTAGAACAAAGAACATTATAA 1332 40.84 MMNRFGVLVAVSIAAYAIRQLTIRSWSSLIYSENGEHTEKNLRRQRRMFHGLDEEQEEQKEANSMNDLEDGDHDHSLDELQEHLPQNKVGETHKIEMERLLKQVMELEERKVKLEGELVMYDGIKNSEMDIMELKKQLEAKNDDINKSNITISSLQAERKELQEEIVKGALVKKELMEAKGKIKELQRQIQVDANQTKQHLLLLKQQVSTLQAKEEEALKKEVELYKKLRAEKDFEVEISELKRKNRELQHENQELTSKLNEREEAKKLRIENEGLIKQLEGLQMNKFSEVEELVYLRWINACLRYELRDNDETPAGESVRYLNKNSSPKSKEKAKQLMLEYAGTETDSIDSSRSRSSSSFSETPNLIRNNSESSGVLSLPMIGLSHGRKDRLEAVLAVRAETLTLSEVIRLQVCSRNSVNSVATSFKLMSKTVEESLEQRTL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 255718 257783 + Cp4.1LG13g00250.1 Cpe13g00031 479229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00031 443 Coils Coil 169 196 - -
Cpe13g00031 443 MobiDBLite consensus disorder prediction 316 368 - -
Cpe13g00031 443 Coils Coil 124 165 - -
Cpe13g00031 443 Coils Coil 90 117 - -
Cpe13g00031 443 Coils Coil 201 286 - -
Cpe13g00031 443 MobiDBLite consensus disorder prediction 53 73 - -
Cpe13g00031 443 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 366 - -
Cpe13g00031 443 MobiDBLite consensus disorder prediction 346 368 - -
Cpe13g00031 443 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 366 IPR040265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00031 - - - csv:101222579 497.278
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01369 Cpe13g00031 CCT
Cpe09g00269 Cpe13g00031 CCT
Cpe01g01369 Cpe13g00031 ECH
Cpe09g00269 Cpe13g00031 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00031 Cpe-Chr13:255718 Cpe17g00521 Cpe-Chr17:4344927 2.81E-37 dispersed
Cpe01g01369 Cpe-Chr1:8231669 Cpe13g00031 Cpe-Chr13:255718 3.82E-101 wgd
Cpe13g00031 Cpe-Chr13:255718 Cpe09g00269 Cpe-Chr9:1562435 5.75E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g251 . Blo16g01047 . Bda11g00222 Bpe13g01324 . . . Cmo04g01612 Cmo18g01069 . Cma18g01050 Car04g01590 Car18g00975 Sed06g1858 Cpe09g00269 Cpe01g01369 Bhi07g01378 Tan04g0905 Cmetu10g1207 Lac13g0451 Hepe10g1864 . . . . . . . . . Cone13ag0861 Cone19ag0861 . . . Csa05g02076 Chy10g01109 Cme10g00298 . . . Bda11g00222 . . . Bma06g00775 . . . . Cma15g01418 . Car15g01280 Cpe13g00031 . Bhi12g00819 . . . . . Lcy10g0877 Cla01g00560 Cam01g0583 Cec01g0575 Cco01g0599 Clacu01g0578 Cmu01g0549 Cre09g1958 Lsi09g00609 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012142 0 6 0 0 0 1 0 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 2 0 1 1 1 3 3 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00031 Cpe_Chr13 FPKM 6.222222 3.204902 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.134063