Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00045 ATGGGCAATTCGTTTGGGTGTTCGGCGTCTGGCGAGCGATTGGTATCGGCTGCGAGAGATGGCGACTTGGTTGAGGCTAAAATGCTTTTAGATTGCAACCCATATCTCGCTAAATACACTTTCGGTGGCCTTAATTCCCCTCTCCATTTTGCAGCTGCTAAAGGCCACAACGAGATTGTGTCCTTGTTGCTTGAAAATGGAGCTGATGTTAATTCCAGGAACTATTGTGGGCAGACAGCAGTGATGCAAGCTTGTCGATATGGGCACTGGGAAGTTGTGCAAACTCTTCTAATTTTCAGATGTAATGTAATGAGAGCAGACTACCTCAGCGGTCGGACCGCTCTCCATTTTGCTGCCATCAATGGTCATGTGAAATGTTTAAGACTTATTATGGCTGATTTTGTTCCTAGCGTTCCTTATGAGGCTATTGCTAGTCAGACAGATGCCAACAGAAGTGATGGTGTTAATGTGAAGAACAGATGTGAACAAGGTGATTTGTCCAAGTTTATAAATAAGGCAGCTGATGATGGCATTACCGCTCTTCATATGGCAGCACTAAATGGCTATTATGATTGTGTTCACCTTCTTCTTGACCTGCATGCCAATTTTGCAGCAATTCTCCTTGCAAGAGGCGCCTCTCGAATGACTTTGAATTGCAATGGGTGGCTTCCTCTAGATGTAGCCAGAATGTGGGGACGCCATTGGCTTGAACCTCTGCTAGCTCCTAATTCAGACTCTATAATACCAAGATTCCCCACTTCGAACCACCTATTATTGCCTCTAATGAGTGCATTAAACATCGCCAGAGAATGTGGTTTTAAGTCGATGGGAGTGACCTCCGACGACAGGGATACCTGTGCTGTCTGTCTCGAAAGAGTATGTTCCGTGGCTGCAGACGGATGTGGACATGAGCTTTGTGTAAAATGTGCGCTCTATCTTTGTTCGACGAGTAATATCCAATCGGAAATGACTGGTTCGTCGGGCTCGATTCCGTGCCCCCTTTGCAGACATGGGATTATATCTTTTGTAAAATTGTCTAGTGCCACAGAAAAGGAAAAACAACTTCACCTCTCTCTTAGCATATGCAACTCATGCATGCTTCATAACGGTGACGCCGAAGATCCAGTTTCGACTTGTTTGCCAGATATCCGGAGGAATCGTGTGGCTATGATTTCTTCAGATGTATTCTGCCCAGTAACTTGCAGCCCATTTCATTCTTCTGCTATTCCTGTGTGTACGTGCAACAATGGTACATGCCCGAGCTTCGAGTCCTGA 1275 45.49 MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPYLAKYTFGGLNSPLHFAAAKGHNEIVSLLLENGADVNSRNYCGQTAVMQACRYGHWEVVQTLLIFRCNVMRADYLSGRTALHFAAINGHVKCLRLIMADFVPSVPYEAIASQTDANRSDGVNVKNRCEQGDLSKFINKAADDGITALHMAALNGYYDCVHLLLDLHANFAAILLARGASRMTLNCNGWLPLDVARMWGRHWLEPLLAPNSDSIIPRFPTSNHLLLPLMSALNIARECGFKSMGVTSDDRDTCAVCLERVCSVAADGCGHELCVKCALYLCSTSNIQSEMTGSSGSIPCPLCRHGIISFVKLSSATEKEKQLHLSLSICNSCMLHNGDAEDPVSTCLPDIRRNRVAMISSDVFCPVTCSPFHSSAIPVCTCNNGTCPSFES 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 334159 340949 + Cp4.1LG13g00390.1 Cpe13g00045 479243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00045 424 SUPERFAMILY Ankyrin repeat 14 241 IPR036770 -
Cpe13g00045 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 361 IPR013083 -
Cpe13g00045 424 ProSiteProfiles Ankyrin repeat region circular profile. 110 131 - -
Cpe13g00045 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBAT33 205 424 - -
Cpe13g00045 424 ProSitePatterns Zinc finger RING-type signature. 301 310 IPR017907 -
Cpe13g00045 424 Gene3D - 107 241 IPR036770 -
Cpe13g00045 424 ProSiteProfiles Ankyrin repeat region circular profile. 176 202 - -
Cpe13g00045 424 SMART ANK_2a 176 205 IPR002110 GO:0005515
Cpe13g00045 424 SMART ANK_2a 76 105 IPR002110 GO:0005515
Cpe13g00045 424 SMART ANK_2a 43 72 IPR002110 GO:0005515
Cpe13g00045 424 SMART ANK_2a 110 140 IPR002110 GO:0005515
Cpe13g00045 424 Gene3D - 8 106 IPR036770 -
Cpe13g00045 424 ProSiteProfiles Zinc finger RING-type profile. 286 336 IPR001841 -
Cpe13g00045 424 Pfam Ankyrin repeats (many copies) 45 97 IPR002110 GO:0005515
Cpe13g00045 424 Pfam Ankyrin repeats (many copies) 170 197 IPR002110 GO:0005515
Cpe13g00045 424 SMART ring_2 286 335 IPR001841 -
Cpe13g00045 424 PANTHER HOMEOBOX PROTEIN WARIAI 205 424 - -
Cpe13g00045 424 PANTHER HOMEOBOX PROTEIN WARIAI 1 206 - -
Cpe13g00045 424 ProSiteProfiles Ankyrin repeat profile. 176 202 IPR002110 GO:0005515
Cpe13g00045 424 ProSiteProfiles Ankyrin repeat profile. 110 131 IPR002110 GO:0005515
Cpe13g00045 424 ProSiteProfiles Ankyrin repeat profile. 43 75 IPR002110 GO:0005515
Cpe13g00045 424 SUPERFAMILY RING/U-box 281 342 - -
Cpe13g00045 424 ProSiteProfiles Ankyrin repeat region circular profile. 43 74 - -
Cpe13g00045 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBAT33 1 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00045 K19044 XBAT32_33; E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27] - zju:107414468 687.567
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00681 Cpe13g00045 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00589 Cpe-Chr11:3520421 Cpe13g00045 Cpe-Chr13:334159 1.13E-92 dispersed
Cpe13g00045 Cpe-Chr13:334159 Cpe18g00594 Cpe-Chr18:6332553 5.79E-120 dispersed
Cpe13g00045 Cpe-Chr13:334159 Cpe05g00681 Cpe-Chr5:4158761 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g617 Blo06g01115 . . . . . . . . . Cma02g01040 . Car02g00785 . . Cpe05g00681 . . . . . . . . Cla01g00540 Cam01g0564 Cec01g0554 Cco01g0579 Clacu01g0560 Cmu01g0532 Cre09g1977 . . . . . Csa05g00574 Chy09g00931 . . . . Bda15g00735 . Bpe12g00419 Bma08g00340 . . Cmo02g01055 . . . . . . Cpe13g00045 . . . . . . . . . . . . . . Lsi09g00584 . . Cme09g01458
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006256 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00045 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0