Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00050 GAATCATCTCTAAACTTCATTCCCATCCTTTCCAAAATGAAGAAACTTTCATTTCTATTGTGTGTATTATCAATGATGGTGCTACTCCAATTTTCTCTCTCCCGAGTTTCAGCGGTAACCTGCATTCAAAAGGAGCGAGAGGCTCTTCTTCAATTCAAAAGAGGTTTTTGGTGGGATCCTTCTCATCGTTTGGCTTCATGGAATGGAACAAATTGCTGTAATTGGTATGGTGTGGGATGTAATCAAACTACTGGGCATATTATTAAGATTGATCTTAGAAGCAATCGGTTAGACTTCTCCTCTCCTTTATTTAACAATTCTATTCACTCTAGTTTGCTTCAGCTCAAACACTTAAATTACTTGGATTTAAGTGGGAACTATTTCAACTATACTCAAATCCCACACTTTTTAGGTTCAATGGTTGAATTAACATATCTTAATCTTTCTAATGCATTTTTTAATGCAAAAGTCCTTCCTCGTCATTTAGGAAATCTTACTAAATTGGTTGTTCTTGATTTGTCGAATTCTTACGATTATTCCATAAGCGGAGTTGAATTGAAGCAACTCAATCGCGACATTGAATGGATATCTCACCTTTCTTCCTTGCACTTCTTTGGCTTGAGTGGTACGAATCTTTCAGAGGCTTCCAATTTAATGCAAGTGCTAAGCTCTCTTCCTTTTTTGTCATCCTTAATATTGAGAGGTTGTGGCCTTCAAAACAACCAATTTTCTTTGAGTTCCATGAATTCTTCGTTTCTTTCTAGAATTCAATATCTAGATTTGTCTGTTAATAATTTTGATGGTCCAATTCCTAAGGCTTTTCACAACATGACTTCCTTGAAATTCCTAGACCTTTCAGACAATCAGTTCACTTCCATTGAGGGTGGAGTTTCATCCTTCATATTTAGAAACAATTGTATCCTAAAAACACTTGATTTATCCTACAACTTTAATCTTGGTGGAGATGTGTTTGGAAGTTATGAAAATGAATCTATGAGTTGCAGTCGGTATGATCTGCAAGTGCTCAACTTACCTGGTACATCTATACAAATCAAAATTCCAGATTGGTTAGGAAAATTCAAAAACTTGAGGTCTCTTTCCCTTTCTAGGAGTCACATTTATGGTTCAATTCCTGCTTCACTTGGCAATTTATCCAGCCTTGAAAATTTATATCTTTCCAGCAACGCTCTAACCGGAGCAATTCCAACTACATTTGGAAAATTATTAAATTTGAGAAAATTAATTCTCGATGGAATAGATTGGAGGAGTTGGGGGAGGAATGTGCTAGACATATCACATAACTTGCTCAAAGGCGTACTTGCAGAAGTTCATTTTGCGAATCTCTCTCGGTTGAATACCTTATTGATTGGTGACAATGAGCATCTTTCATTAGACATGAAATCTAACTGGATTCCTACCTTTCAGTTAAAGTATTTTTATGCAAGTTCATGTACGGATTGTTTTGGAAGTGAGTTCCCTCAATGGCTTCGAACACAAAAGGCATTGGTTACTTTGGGGTTGTCCAAGACAAGTATCTCAAGCGATTTTCCTATATGGTTGAGAGCCCGAAGTCTCACCGCTTTGGATCTTTCCCACAACCAAATTGTGGGGCCAATTCCCACAAGCATTGGAGATCAAATGCCGAATTTGAAATACTTGTATCTCAATGGTAATCTTATCAATCATTCTTTACCATTTTCACTTTGCAAGTTGAAGAATTTGACTGGAGTGGATCTTTCAAGTAATGAGTTTTCAGGAATGGTTCAAGGTTGTTTGCTGACTTCAAACTTGATGCTTTTGGATTTGTCTTCAAACAATTTTTCCGGGACATTTCCATATTCACATGGAAATCTTTCTGAAGGACCTATCCCACAAAATCTCCGCAATTTTAATGCAATGACAGGGCAAGCATATGCTGCCTTTTCCAGGACAATTCCTGCTGAAATAGGAGAAATCGAATCGTTGGAATCACTTGATTTATCTTTCAATCAACTTTCCGGGCCAATTCCCAGGAGCATATCAAGATTAAATTCATTAGGCGATTTGAAACTATCTCACAACAATCTCTCTGGAGAGATTCCTCGAGAGGGTCATCTTTCCACATTCAATGAGGCTTCAAGTTTTGATGACAATCCTTATCTTTGTGGCGATCCGCTTCCAAAGAAGTGTAGAACTGAGAATTCTTTTGAGCCGCCGTTCAGAAATATCGAGAATCAAGATGAAGAGGAGAATAAATGGGAGAAGTGGTTGCTTTACCTAATGATAATACTTGGCTATGCGGTCGGATTTTGGGGAGTTGTTGGAGCTTTGATATTGAAGAGGAATTGGAGATACGCTTATTTCAACTTTGTGGATGAGAGTAAAGACAAGATTCATGCAACAATGCAGCGGAGCATCGAGACGTTGAAAGGAATGTGCATTCACAAACCTACGATTGCTGCTGTTGTTGTCGTCGTTGCATATGCTCACACTTCAAGTACTGGACCCCTGGTTGTAATCCTTCCTCTCGATCTCGACTCCTCGATCTTTTCGTTCACCTCAGCGATTACAAGCCTTGTCAAAAACAGCCCTGCTATTAGAGCTGAGATCATCAGCATTACGAACACCAAACTCCAGCTTTTCGCCGATAAGTATCCTGTCAACAAGGGTCCAATCGCAGCCCCAACCGAGCCAGTACCATCGATAATCGCCGTCACAGTAGCAAGCGCCCGAGAATTCCCGTTGAGTGAACTGTGGGTTCCCAAATCAGCAGAGACGGCGGTTGTTATAAGAGCATATGGGCCATTGACAAACATGCCAGTGATGAACATGAGAGATACATTCATGAGAGCAGGAATGGAACAGTACATGAAACTAGCAGCTGTTATGGCTCTAGCACCTAAGCGATCAGAAATATGGCCAGCTAGAATTCCTCCTATTACTCCTCCCATATCGAACAATGTCGAAAGGTTCCCGGCTGTGGTACTCGACAAATATTTCCCGTCGATAACTGTAAGAACATTAACAACAAATCAGATTTCACAAGCAAACAACAAACAGAAATGCAGCTCACCTGTGTGGCTAATTTTGGCAAAGAAGAGGCAAAATGCAAAAGGTGCAACACCAGGAATTCTCCACGCTTCCATAAAACCGACCGCCTTCTCGATCTCCGATGCTGATTTCAATAGAGGTACTGTAGTTCCCTCTCCAACTTTCTTGAGAGAGCTCAAGCCATCTCCTTCTTTATCGATTCCAACCGACTCGGGATTCACAGGAAGAAACAGAAACACTACCAAACCTGATAACGCAATGATCAGACCAGGGACAACCAATGACCAACCCCAACCATAG 3330 40.06 ESSLNFIPILSKMKKLSFLLCVLSMMVLLQFSLSRVSAVTCIQKEREALLQFKRGFWWDPSHRLASWNGTNCCNWYGVGCNQTTGHIIKIDLRSNRLDFSSPLFNNSIHSSLLQLKHLNYLDLSGNYFNYTQIPHFLGSMVELTYLNLSNAFFNAKVLPRHLGNLTKLVVLDLSNSYDYSISGVELKQLNRDIEWISHLSSLHFFGLSGTNLSEASNLMQVLSSLPFLSSLILRGCGLQNNQFSLSSMNSSFLSRIQYLDLSVNNFDGPIPKAFHNMTSLKFLDLSDNQFTSIEGGVSSFIFRNNCILKTLDLSYNFNLGGDVFGSYENESMSCSRYDLQVLNLPGTSIQIKIPDWLGKFKNLRSLSLSRSHIYGSIPASLGNLSSLENLYLSSNALTGAIPTTFGKLLNLRKLILDGIDWRSWGRNVLDISHNLLKGVLAEVHFANLSRLNTLLIGDNEHLSLDMKSNWIPTFQLKYFYASSCTDCFGSEFPQWLRTQKALVTLGLSKTSISSDFPIWLRARSLTALDLSHNQIVGPIPTSIGDQMPNLKYLYLNGNLINHSLPFSLCKLKNLTGVDLSSNEFSGMVQGCLLTSNLMLLDLSSNNFSGTFPYSHGNLSEGPIPQNLRNFNAMTGQAYAAFSRTIPAEIGEIESLESLDLSFNQLSGPIPRSISRLNSLGDLKLSHNNLSGEIPREGHLSTFNEASSFDDNPYLCGDPLPKKCRTENSFEPPFRNIENQDEEENKWEKWLLYLMIILGYAVGFWGVVGALILKRNWRYAYFNFVDESKDKIHATMQRSIETLKGMCIHKPTIAAVVVVVAYAHTSSTGPLVVILPLDLDSSIFSFTSAITSLVKNSPAIRAEIISITNTKLQLFADKYPVNKGPIAAPTEPVPSIIAVTVASAREFPLSELWVPKSAETAVVIRAYGPLTNMPVMNMRDTFMRAGMEQYMKLAAVMALAPKRSEIWPARIPPITPPISNNVERFPAVVLDKYFPSITVRTLTTNQISQANNKQKCSSPVWLILAKKRQNAKGATPGILHASIKPTAFSISDADFNRGTVVPSPTFLRELKPSPSLSIPTDSGFTGRNRNTTKPDNAMIRPGTTNDQPQP 1109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 375449 380682 - Cp4.1LG13g00490.1 Cpe13g00050 479248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00050 1109 Gene3D Ribonuclease Inhibitor 41 218 IPR032675 -
Cpe13g00050 1109 SUPERFAMILY RNI-like 104 402 - -
Cpe13g00050 1109 PANTHER RECEPTOR LIKE PROTEIN 30-LIKE 523 592 - -
Cpe13g00050 1109 PANTHER RECEPTOR LIKE PROTEIN 30-LIKE 22 541 - -
Cpe13g00050 1109 PANTHER LRR RECEPTOR-LIKE KINASE 597 792 - -
Cpe13g00050 1109 Pfam Leucine rich repeat 523 583 IPR001611 GO:0005515
Cpe13g00050 1109 Pfam Leucine rich repeat 362 418 IPR001611 GO:0005515
Cpe13g00050 1109 SUPERFAMILY L domain-like 641 712 - -
Cpe13g00050 1109 Gene3D Ribonuclease Inhibitor 330 424 IPR032675 -
Cpe13g00050 1109 PANTHER LRR RECEPTOR-LIKE KINASE 22 541 - -
Cpe13g00050 1109 Pfam Leucine Rich Repeat 654 676 IPR001611 GO:0005515
Cpe13g00050 1109 ProSiteProfiles Leucine-rich repeat profile. 279 300 IPR001611 GO:0005515
Cpe13g00050 1109 MobiDBLite consensus disorder prediction 1063 1109 - -
Cpe13g00050 1109 Gene3D Ribonuclease Inhibitor 426 730 IPR032675 -
Cpe13g00050 1109 PANTHER RECEPTOR LIKE PROTEIN 30-LIKE 597 792 - -
Cpe13g00050 1109 PANTHER LRR RECEPTOR-LIKE KINASE 523 592 - -
Cpe13g00050 1109 Gene3D Ribonuclease Inhibitor 219 322 IPR032675 -
Cpe13g00050 1109 SMART LRR_sd22_2 384 413 - -
Cpe13g00050 1109 SMART LRR_sd22_2 277 299 - -
Cpe13g00050 1109 SMART LRR_sd22_2 547 576 - -
Cpe13g00050 1109 SMART LRR_sd22_2 652 678 - -
Cpe13g00050 1109 SUPERFAMILY L domain-like 337 618 - -
Cpe13g00050 1109 MobiDBLite consensus disorder prediction 1074 1109 - -
Cpe13g00050 1109 SMART LRR_typ_2 652 676 IPR003591 -
Cpe13g00050 1109 SMART LRR_typ_2 384 407 IPR003591 -
Cpe13g00050 1109 SMART LRR_typ_2 115 140 IPR003591 -
Cpe13g00050 1109 SMART LRR_typ_2 277 300 IPR003591 -
Cpe13g00050 1109 SMART LRR_typ_2 547 571 IPR003591 -
Cpe13g00050 1109 Pfam Leucine rich repeat N-terminal domain 44 81 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00050 - - - cpep:111808342 793.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00039 Cpe-Chr13:313031 Cpe13g00050 Cpe-Chr13:375449 2.70E-08 dispersed
Cpe13g00050 Cpe-Chr13:375449 Cpe14g00226 Cpe-Chr14:1298041 9.09E-08 dispersed
Cpe13g00050 Cpe-Chr13:375449 Cpe19g00841 Cpe-Chr19:6237372 7.28E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe13g00050 . . . . . . . . . . . . . . . . . .
Vvi16g681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe13g00050 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000277 0 6 1 0 0 5 0 8 6 10 5 6 1 10 13 10 5 0 1 5 7 4 4 5 7 8 5 6 5 0 143
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00050 Cpe_Chr13 FPKM 3.291865 3.814292 0.354605 0.251601 2.359434 3.5733 1.845282 0.091549 0.0 0.0