Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00051 ATGGCTAAGGAAGAAGTTAGCATAAGTGATGAAGCTGACCGTCGGTTACCTGCACACTCCAGCGCCGAATGCGACCCACTGGCTGCTTCGACATCGGCGTCTGTAGGACCGCTGTGGCATCCTAGGCAACTCGGTTTTAGTCCTTATTTGTACCGGGAAGATGCTGCTGCTGCTGCTGCTGCGAAACCCCAAGATTCGCGTTTTGCCGCCAGAATACCCCTGGTTGCTAGATTAACCAAGGACATCGTTGAAACCTACAGAAAATGCAATCCAGAGTTTAAATATTCAGAAGAGTTAAACCTGAAGAGATTTTTGACGAGTCCATCAACTGGAGTCCTCAATGATGGCTATGATAATGTGAACTCAGATCTTATTTTGACGGTGAACTCCGTTTTACTCAATTCTGATACACAACGGAGATATGTTGTCAAAGATCTACTTGGTCATGGGACCTTTGGGCAGGTTGCTAAATGCTGGGTTGCAGAAACTAACAGCTTCGTAGCTTTGAAGATCATAAAAAACCAACCTGCATATTATCAGCAAGCACTGGTTGAAGTATCTATTTTGACATTGTTAAATAAGAAGTATGATCCTGAGGACAAGCATCATATTGTCCGTATTTATGATTACTTTGTATATCAACGTCATCTGTGCATTTGCTTCGAGCTGCTTGATACAAATTTGTATGAGCTTATCAAGATCAATCATTTTAGGGGGTTGTCATTGAGCATTGTTCAAATGTTATCCAAACAGATCTTATGCGGGCTTGCACTATTGAAAGATGCTGGCATTATTCATTGTGATTTAAAGCCAGAAAATATTCTTTTATGCACGAGTGCCAAGCCGGCAGAAATTAAAATAATTGACTTCGGATCAGCTTGCATGGAAGCCCGCACTGTTTATTCTTACATCCAGAGCCGCTACTATAGGTCTCCAGAAGTCCTGCTCGGATATCAATACACTACAGCTATAGATATGTGGTCCTTTGGATGCATAGTTGCTGAGTTGTTTCTTGGACTGCCATTATTTCCAGGAGCTTCTGAGTTCGATTTATTGAGGCGGATGATCGACATTCTTGGTGGTCGAAGCAGTTTTCAAGCATTAAAAGCAGATGAATATGAAGCTAGAGAGATGAAAAAGCCTTCAATTGGAAAAGAGTATTTCAATCGAATGAACCTCGAGGCAATTGTGACTAACTACCCTTACAGAAAGAACTTAGCTGAGGAAGATATTAGGAAAGAGAGTCAAGTACGATTGGCCTTAATTGATTTCCTAAAGGGCCTTGTAGAGTTCGATCCTGCAAAAAGGTGGTCGCCTTTCCAGGCCTCCAAACACCCTTTTGTCACAGGAGAGCCTTTCACATGCCCATACACGCCTCCACCGGAGACCCCACGTTTGCTTGTTTCACAAAGCATAAAGGTGGACAACCATCATCCAGGTGGAGGGCATTGGTTTGCAGCTGGTCTCTCTCCCAATGTGAGACTGCTGTCCCTTTACTACCGTGGTGGTCTTTCAAATTGTTTGTTGTTATTTTTGCCAGATTTACCAAGTTTTTCTGATCTGAAGTACATATCTACTTCTATTCAGATTGCAGGTAGGAGCAGAGTTCTGCAGAGCAGCCCACATTTTCAAATGGTACCATACGTCCATGCCAATAGTTATGGCAGCGTTGGAAGTCATGGTAGCTACAACGAAACTATTGGATTCGGAAACAGCTACGGAAGTTACGGAGACAATGGTATGCTTGCCTATTATTCACCTGTTGGTCCATCTGGAATGAATATGCATCCTCAGGGAAGGATATCAATGCGTGCAAGCAGCCCAGATACTCGGCAGAGGGTTTTCCAATTATCACATGGCAATGGGATTGGTGTGAGCCCATCAACCGGGAACTTTGCGCCACTGCCCCTAGGCACGAGTCCATCGCAGTTTACTCCACCAAGCAGCTATGGTCAAGTTTCAGTGGGCTCTCCTGGACACTTTGGGCCAACTTCTCCTGCAAGGGGTAGTTGTCAGGGATCGCCTTTGGGGAAAATGGCTACAGTCGGTCAATTTAATAGAAGGAAATTTTGGGATTACTCTGGTAGTCATGATGGTTCTTCATCTTCGCACTGGCAAGGTCAATCTACTGAAGGCACGAGTTACGGTCTACAAGCTGATGGGAACTCTTTACATGGTTGCTCCCCATCTCATCTACCACCAAGTAGCAATGCCAGCAGCTGGAAGCAGCAGCATCAAGTAGGTAGTGGAAGCTCTGCTGGTTACCCTACCATTCAGAGTATGCCAGGAGCTCATTTGCCTGGTTCCAATATGCAATTTTCGCAACCATCGGACGTGGCTCGTAACAAGTCTGAATTGCCTGATCCTGGAGATTGGGATCCCAATTATAGTCCAGTAGAAGGTACAAAATCTGATGTCAGCAGCATTGCGAGTGAGTTGAGCAACATGCATGTGGGTTCATCTAATCCATCGATTGGGATTGGAAGATTTCGTATGCCAAGCGCTAATTTGAATGTAACCTCACAAAGAAAAAGTGGACATGTCCAAGATATGGGAAGCCCGCCCTCAGGTCAAGATTTGTACACCGGATATGGTCGTCCCTCATCGAAGCATTCCCATTTCATGGCTCATAGTTCACACAATTCCCCGAGCCGTTTGGGGCAGCAACCTGTTGAGCGATGGAAGGAAGGGAGAAGCAGGAAGGTCGGAGGAGGTTACGAGTGGAACCAGGTGAAGATCCAACCGCCTCTTGCGAGCTATAATTCTGGAGGCCCTGGTTCTCCCGGAGGAGGAGGAAGTGGTGGGTCCTTGAGGAGTAGGAGTGGTGGGATGTCATGGGGTAAATATGATGGTGATGATGCTTTGAAAACCACAGTATATGGTGTGAATGTGAATGAATGA 2901 45.4 MAKEEVSISDEADRRLPAHSSAECDPLAASTSASVGPLWHPRQLGFSPYLYREDAAAAAAAKPQDSRFAARIPLVARLTKDIVETYRKCNPEFKYSEELNLKRFLTSPSTGVLNDGYDNVNSDLILTVNSVLLNSDTQRRYVVKDLLGHGTFGQVAKCWVAETNSFVALKIIKNQPAYYQQALVEVSILTLLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKINHFRGLSLSIVQMLSKQILCGLALLKDAGIIHCDLKPENILLCTSAKPAEIKIIDFGSACMEARTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIDILGGRSSFQALKADEYEAREMKKPSIGKEYFNRMNLEAIVTNYPYRKNLAEEDIRKESQVRLALIDFLKGLVEFDPAKRWSPFQASKHPFVTGEPFTCPYTPPPETPRLLVSQSIKVDNHHPGGGHWFAAGLSPNVRLLSLYYRGGLSNCLLLFLPDLPSFSDLKYISTSIQIAGRSRVLQSSPHFQMVPYVHANSYGSVGSHGSYNETIGFGNSYGSYGDNGMLAYYSPVGPSGMNMHPQGRISMRASSPDTRQRVFQLSHGNGIGVSPSTGNFAPLPLGTSPSQFTPPSSYGQVSVGSPGHFGPTSPARGSCQGSPLGKMATVGQFNRRKFWDYSGSHDGSSSSHWQGQSTEGTSYGLQADGNSLHGCSPSHLPPSSNASSWKQQHQVGSGSSAGYPTIQSMPGAHLPGSNMQFSQPSDVARNKSELPDPGDWDPNYSPVEGTKSDVSSIASELSNMHVGSSNPSIGIGRFRMPSANLNVTSQRKSGHVQDMGSPPSGQDLYTGYGRPSSKHSHFMAHSSHNSPSRLGQQPVERWKEGRSRKVGGGYEWNQVKIQPPLASYNSGGPGSPGGGGSGGSLRSRSGGMSWGKYDGDDALKTTVYGVNVNE 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 381166 395374 - Cp4.1LG13g00610.1 Cpe13g00051 479249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00051 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Cpe13g00051 966 MobiDBLite consensus disorder prediction 872 888 - -
Cpe13g00051 966 MobiDBLite consensus disorder prediction 841 856 - -
Cpe13g00051 966 MobiDBLite consensus disorder prediction 695 805 - -
Cpe13g00051 966 MobiDBLite consensus disorder prediction 917 953 - -
Cpe13g00051 966 MobiDBLite consensus disorder prediction 1 20 - -
Cpe13g00051 966 CDD PKc_YAK1 141 448 - -
Cpe13g00051 966 MobiDBLite consensus disorder prediction 639 659 - -
Cpe13g00051 966 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524
Cpe13g00051 966 MobiDBLite consensus disorder prediction 841 900 - -
Cpe13g00051 966 MobiDBLite consensus disorder prediction 1 23 - -
Cpe13g00051 966 Gene3D Transferase(Phosphotransferase) domain 1 222 449 - -
Cpe13g00051 966 MobiDBLite consensus disorder prediction 695 781 - -
Cpe13g00051 966 PANTHER BNAC04G29850D PROTEIN 362 493 - -
Cpe13g00051 966 PANTHER BNAC04G29850D PROTEIN 37 362 - -
Cpe13g00051 966 PANTHER BNAC04G29850D PROTEIN 530 740 - -
Cpe13g00051 966 PANTHER DUAL SPECIFICITY PROTEIN KINASE 362 493 - -
Cpe13g00051 966 PANTHER DUAL SPECIFICITY PROTEIN KINASE 530 740 - -
Cpe13g00051 966 SUPERFAMILY Protein kinase-like (PK-like) 137 470 IPR011009 -
Cpe13g00051 966 Gene3D Phosphorylase Kinase; domain 1 105 221 - -
Cpe13g00051 966 ProSiteProfiles Protein kinase domain profile. 141 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00051 966 SMART serkin_6 141 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00051 966 MobiDBLite consensus disorder prediction 639 678 - -
Cpe13g00051 966 PANTHER DUAL SPECIFICITY PROTEIN KINASE 37 362 - -
Cpe13g00051 966 Pfam Protein kinase domain 141 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00051 K18670 YAK1; dual specificity protein kinase YAK1 [EC:2.7.12.1] - csv:101210441 1556.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00291 Cpe13g00051 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00994 Cpe-Chr9:8807089 Cpe13g00051 Cpe-Chr13:381166 1.57E-47 dispersed
Cpe13g00051 Cpe-Chr13:381166 Cpe20g00007 Cpe-Chr20:52353 1.89E-52 dispersed
Cpe01g01361 Cpe-Chr1:8180932 Cpe13g00051 Cpe-Chr13:381166 7.60E-41 wgd
Cpe13g00051 Cpe-Chr13:381166 Cpe05g00687 Cpe-Chr5:4201031 0 wgd
Cpe13g00051 Cpe-Chr13:381166 Cpe09g00291 Cpe-Chr9:1718419 6.59E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006755 0 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62772 PF00069 Pkinase 8.10E-51 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00051 Cpe_Chr13 FPKM 51.047409 55.767456 27.000696 30.552341 64.212845 78.920746 49.167423 28.765705 28.849741 26.235865