Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00055 ATGGTTCGAGGAAAAGTTGAAATGAAACGGATTGAGAATTCGACAAGCCGTCAAGTAACATTCTCAAAGAGACGAAATGGGATATTGAAAAAGGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAAGTTTCTGTCATCATTTTCTCTCAGAAAGGAAGGCTCTATGAGTTCTCCAGCTCCATTATGCAAAAGACAATCGAACGCTACCGCAAGTATGGGAAAGGTGGAGAAACCAACACTTTTCAATCCGAAGGATATATGCAGCAAATGAAGCAAGAAGTTGAAATGACGGCAAAGAAAATTGAGGAACTTGAAAAGTCACAAAAGAAGCTTATGGGACGAGGCTTGGATTCTTGTTCCTTTGAGGAAGTTCGTGAGATCGAAAAACAGTTGATACTAAGCTTAACCCGCATTAGAGAAAGAAAGGGGAAACTCCTTATAGAAGAAAACAAAAAGTTATCTGCTAAGTGTGGTACTAAGCCATGGGAACAAGAAGGTATTGAAGCAGAGGGAGGCATAATGAGTTTATGCAGCCAAAGTAGACAGGGTTCTGATATACAGACTGAATTGTTCATTGGATTGTCTTGCTCATAA 594 39.73 MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQQMKQEVEMTAKKIEELEKSQKKLMGRGLDSCSFEEVREIEKQLILSLTRIRERKGKLLIEENKKLSAKCGTKPWEQEGIEAEGGIMSLCSQSRQGSDIQTELFIGLSCS 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 415744 425911 + Cp4.1LG13g00520.1 Cpe13g00055 479253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00055 197 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Cpe13g00055 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe13g00055 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe13g00055 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe13g00055 197 Pfam K-box region 87 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe13g00055 197 PANTHER MADS BOX PROTEIN 1 194 - -
Cpe13g00055 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe13g00055 197 ProSiteProfiles K-box domain profile. 87 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe13g00055 197 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Cpe13g00055 197 Coils Coil 87 107 - -
Cpe13g00055 197 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Cpe13g00055 197 PANTHER MADS-BOX PROTEIN SOC1 1 194 - -
Cpe13g00055 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe13g00055 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe13g00055 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00055 Cpe-Chr13:415744 Cpe13g00187 Cpe-Chr13:1468337 9.18E-53 dispersed
Cpe13g00055 Cpe-Chr13:415744 Cpe05g00693 Cpe-Chr5:4253722 3.28E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50378 PF01486 K-box 6.80E-17 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00055 - - csv:101212323 315.464