Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00058 ATGGCGGAGGAGGGAAACCACGGCGTTCCACTTGTGTTCGACGCGGCGGTTCTCCGGCATGAACAGAAGATTCCGAAGCAGTTCATATGGCCGGACGAGGATAAGCCGACCGGGCAGTGCCCGGAGCTGGAAGTCCCATTGATCGACTTGTCGGGATTTGTGTCCGGGGACAAAGATTCGGTGGGGGAGGCCATCCGACTTGTCGGCGAGGCATGTCAAAAACATGGTTTTTTTCTTGTGGTGAATCATGGGGTTGACTCCAAGTTGATTGCGGAAGCTCATAAGTACATGAACGAGTTCTTTGAATTGCCGCTTTGTGAGAAACAGAGGGCTCAGAGGCTAGCCGGTGAGCACTGTGGGTATGCTAGCAGCTTCACTGGTCGATTCTCTTCCAAATTGCCTTGGAAAGAGACTCTTTCCTTTCGATTCTCTGCTGATGATTCCTTCCCTAATCTTGTTCTTCATTACCTTTCTGCCAAGCTCGGTGACCAATTCCTCGACTTCGGTAGGGTATATCAGGAGTATTGTGAAGCAATGAGTGGGCTATCGTTGGGGATAATGGAGCTGTTAGGGAAGAGCCTTGGAGTAGAAGGAGATTACTTCAAGAACTTCTTCAAAGACAATGATTCAATAATGAGACTGAACTTCTATCCGCCATGCCAGAAGCCCCATCTGACCTTAGGCACTGGCCCTCACTGTGACCCAACGTCTTTGACCATTCTTCACCAAGACCAAGTCGGTGGCTTACAAGTTTTTGTAGACAACCAATGGCGTCTCATTGCCCCTAACTTTGATGCTTTTGTTATCAATATTGGTGACACTTTCATGGCACTATCAAATGGGAGATACAAGAGTTGCTTGCATAGAGCGGTGGTGAACAACGAGACAACAAGGAAATCTTTAGCATTCTTTTTGTGTCCAAGAAATGATAAAGTGGTAAGGCCACCAAGGGAGCTGGTGGACACTCAGAACCCACGAATCTATCCAGACTTTACATGGTCTATGCTCCACCACTTCACTCTCAACAATTACAGAGCTGACATGAAAACCCTTGATGTTTTTTCAGCTTGGCTTCGACACACCTAA 1086 47.7 MAEEGNHGVPLVFDAAVLRHEQKIPKQFIWPDEDKPTGQCPELEVPLIDLSGFVSGDKDSVGEAIRLVGEACQKHGFFLVVNHGVDSKLIAEAHKYMNEFFELPLCEKQRAQRLAGEHCGYASSFTGRFSSKLPWKETLSFRFSADDSFPNLVLHYLSAKLGDQFLDFGRVYQEYCEAMSGLSLGIMELLGKSLGVEGDYFKNFFKDNDSIMRLNFYPPCQKPHLTLGTGPHCDPTSLTILHQDQVGGLQVFVDNQWRLIAPNFDAFVINIGDTFMALSNGRYKSCLHRAVVNNETTRKSLAFFLCPRNDKVVRPPRELVDTQNPRIYPDFTWSMLHHFTLNNYRADMKTLDVFSAWLRHT 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 457012 460025 + Cp4.1LG13g00530.1 Cpe13g00058 479256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00058 361 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 207 307 IPR005123 -
Cpe13g00058 361 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 8 359 - -
Cpe13g00058 361 Pfam non-haem dioxygenase in morphine synthesis N-terminal 45 145 IPR026992 -
Cpe13g00058 361 SUPERFAMILY Clavaminate synthase-like 16 347 - -
Cpe13g00058 361 PANTHER GIBBERELLIN 20-OXIDASE 8 359 - -
Cpe13g00058 361 Pfam 2OG-Fe(II) oxygenase superfamily 209 307 IPR044861 -
Cpe13g00058 361 Gene3D - 14 345 IPR027443 -
Cpe13g00058 361 PRINTS Isopenicillin N synthase signature 68 85 - -
Cpe13g00058 361 PRINTS Isopenicillin N synthase signature 232 253 - -
Cpe13g00058 361 PRINTS Isopenicillin N synthase signature 267 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00058 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - csv:101212803 650.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00698 Cpe-Chr5:4294182 Cpe13g00058 Cpe-Chr13:457012 1.97E-176 dispersed
Cpe05g00699 Cpe-Chr5:4298583 Cpe13g00058 Cpe-Chr13:457012 0 dispersed
Cpe05g00700 Cpe-Chr5:4301844 Cpe13g00058 Cpe-Chr13:457012 3.02E-124 dispersed
Cpe05g00701 Cpe-Chr5:4304047 Cpe13g00058 Cpe-Chr13:457012 3.02E-124 dispersed
Cpe10g00323 Cpe-Chr10:1879334 Cpe13g00058 Cpe-Chr13:457012 1.39E-136 dispersed
Cpe13g00058 Cpe-Chr13:457012 Cpe19g00512 Cpe-Chr19:4367343 5.10E-136 dispersed
Cpe12g00002 Cpe-Chr12:8040 Cpe13g00058 Cpe-Chr13:457012 1.45E-160 transposed
Cpe12g00369 Cpe-Chr12:2623145 Cpe13g00058 Cpe-Chr13:457012 6.47E-33 transposed
Cpe13g00058 Cpe-Chr13:457012 Cpe05g00697 Cpe-Chr5:4291819 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g711 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe13g00058 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000977 3 1 5 3 4 2 2 2 2 2 2 2 3 2 2 3 2 7 7 2 2 4 2 2 2 2 2 3 3 2 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00058 Cpe_Chr13 FPKM 67.710686 71.706406 21.396551 18.649878 123.598946 119.300438 124.140945 1.291249 1.461744 1.003458