Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00069 ATGGCTTCCACGAACTCACCGCCTAACATTGACTCTTCGGAGTTGACGGAGGATTTAGCGACGAAGGCTTTGAATAAACGGTATGAGTGCCTTGTAACTGTTCGAACGAAGGCTATTAAGGGGAAAGGAGCTTGGTATTGGGCTCATTTGGAGCCTGTTCTTATACGGAATCCTAGTAATAGTCTTCCGAAAGCGGTGAAGCTCAAGTGTTCTTTGTGCGATTCTGTTTTTTCGGCTTCGAACCCTTCGCGGACTGCATCTGAGCATTTGAAGCGAGGCACTTGTCCTAATTTGAGCTCCATTTCTCTGTCTAATGCTTCGGCGTCGCCGTTGCCGATATCGTCCATCCCTTCTCCGACATTTCACAACCACAAGAAGCGAAGCTCCCCAATGAATGCTCCAATTCTTACTGCTTCCTATCAAGTTCATTCGCTTGCCATGATTGAGCCGACGCGGTCCTATGCTCCGCTAATTTCCTCGCCGCGGACGCCAGTGGCTCAAAATCCGCGGTTGAGTCAGCATCAGTTGGTGTTATCAGGTGGGAAAGATGATTTGGGTGCACTAGAAATGCTGGAAAACAGTGTCAAGAAACTGAAGAGTCCACATGCCTCACCTGGACCAAGGCTAAGTAAGGAACAAATCGATTCTGCCATCGAATTACTGACTGATTGGCTTATTGAGTCATGTGGGTCAGTGTCGCTTTCGTGCCTTGAGCACCCAAAGTTCAAAGCCTTGCTTAGTCAGTTAGGTTTGCCTTCAATACCTCGAACCGACATTTTAGGAGCTCGGCTCGACTCCAAGTTTGAAGAGGCCAAAGCTGATTCAGAAGCCAGGATTAGAGATGCAGCGTCTTTTCAAATTGCTTCAGATGGCTGGAAGAATAAGAACTGCTGTGGCGAAGAGAGTGTAGTTAAATTTATGGTCAATCTTCCAAATGGTACTACTGTGTTTCAAAAAGCACTATTTACAGGGGGACTGGTATCATCCAAGTATGCCGAAGAGGTTATTTTGGATACGGTCAACGAGATTTGTGGGAGTGATCTGCAGAAATGTGTGGGGATAATTGCAGATAAGTATAAGGCCAAGGCGTTGAGGAATTTGGAGATAAAGTATCATTGGATGGTAAATCTCTCTTGCCAGCTTCAGGGTTTTATTAGTTTGATAAAGGATTTTAACAAAGAGCTTCCACTTTTCAGGGTAGTTACTGAAAATTGCTTGAAGGTTGCAAACTTTGTAAGCACCAAATCTCAAGTTAGGGATTGTTTAAACAAGTATAAGGTGCAGGAGTTAGAGGGCCATTTGTTGCTTCATGTTCCTTCGCCAAACTGTGATACATCCAAAAACTTTTCTCCTGTTTATGCTATGCTTGATGATTTGCTTAGCTGTGCTCATGTGCTTCAAATGGCTGTGTTAGACGAGTCCTATAAGCTGGCATGCATGGAGGATTCACTTGCCACTGAGGTTTCTAGTCTGATACAAAATGAACGCTTTTGGGATGAAGTAGAGGCAGTTCATTCATTTGTAAAGATGATCCGAGGGATGGCTCGAGAGATTGAAGCCGAAAGGCCACTGATAGGGCAATGCTTGCCTCTTTGGGAAGAGCTGAGATCAAAAGTGAAGGAATGGTGTGCAAAATACAGCATAGCCGAAGAGCCAGTGGAAAAAATTATAGAAAAGCGGTTTAGGAAAAATTATCATCCAGCATGGTCAGCTGCATTTATTCTGGACCCTCTTTACTTGAGGAGGGACATAAATGGGAAATATCTTCCACCCTTCAAGTGCCTTTCGCAAGATCAGGAAAAGGATGTGGATTCACTTGTTAATCGGTTGGTGTCCAGGGAAGAAGCTCATGTCGCATTCATGGAGCTTATGAAATGGAGATCCGAAGGACTAGACCCACTTTATGCTCAGGCAGTTCAGGTTAAACAACGAGACCCTTTAACTGGAAAGATGAAAATTGCCAACCCACAGAGTAGGCGCCTTGTCTGGGAAACTTGCCTAAGCGAGTTTAAGACCCTTGCCAAGGTTGCACTAAGGCTCATTTTCCTCCATTCAACATCTTGTGGCTACAAGTGTAAATGTTCTATCATGAATTTGGTTTGCTCGCATCGACACTCCAGGGTCGGCTTGGAGAAAGCTCAGAAGATGGTATTTGTTGCAGCTCATGCCAAGCTTGAAAGGGGTGACTTTTCTAACGAGGGAGACAAAGATGCAGAACTATTTTCAATGGCAGATGGTGAAAATGACATACTCAATGAGGTCTTTTCTGATGCACCCTCAATTAACGTGGTGGATATGTTTGATCAAACGGAACCAGAGCTGTCAGAAGTCAACCTCGGACTAGACCCACTTTATGCTCAGGCAGTTCAGGTTAAACAACGAGACCCTTTAACTGGAAAGATGAAAATTGCCAACCCACAGAGTAGGCGCCTTGTCTGGGAAACTTGCCTAAGCGAGTTTAAGACCCTTGCCAAGGTTGCACTAAGGCTCATTTTCCTCCATTCAACATCTTGTGGCTACAAGTGTAAATGTTCTATCATGAATTTGGTTTGCTCGCATCGACACTCCAGGGTCGGCTTGGAGAAAGCTCAGAAGATGGTATTTGTTGCAGCTCATGCCAAGCTTGAAAGGGGTGACTTTTCTAACGAGGGAGACAAAGATGCAGAACTATTTTCAATGGCAGATGGTGAAAATGACATACTCAATGAGGTCTTTTCTGATGCACCCTCAATGTAA 2736 44.66 MASTNSPPNIDSSELTEDLATKALNKRYECLVTVRTKAIKGKGAWYWAHLEPVLIRNPSNSLPKAVKLKCSLCDSVFSASNPSRTASEHLKRGTCPNLSSISLSNASASPLPISSIPSPTFHNHKKRSSPMNAPILTASYQVHSLAMIEPTRSYAPLISSPRTPVAQNPRLSQHQLVLSGGKDDLGALEMLENSVKKLKSPHASPGPRLSKEQIDSAIELLTDWLIESCGSVSLSCLEHPKFKALLSQLGLPSIPRTDILGARLDSKFEEAKADSEARIRDAASFQIASDGWKNKNCCGEESVVKFMVNLPNGTTVFQKALFTGGLVSSKYAEEVILDTVNEICGSDLQKCVGIIADKYKAKALRNLEIKYHWMVNLSCQLQGFISLIKDFNKELPLFRVVTENCLKVANFVSTKSQVRDCLNKYKVQELEGHLLLHVPSPNCDTSKNFSPVYAMLDDLLSCAHVLQMAVLDESYKLACMEDSLATEVSSLIQNERFWDEVEAVHSFVKMIRGMAREIEAERPLIGQCLPLWEELRSKVKEWCAKYSIAEEPVEKIIEKRFRKNYHPAWSAAFILDPLYLRRDINGKYLPPFKCLSQDQEKDVDSLVNRLVSREEAHVAFMELMKWRSEGLDPLYAQAVQVKQRDPLTGKMKIANPQSRRLVWETCLSEFKTLAKVALRLIFLHSTSCGYKCKCSIMNLVCSHRHSRVGLEKAQKMVFVAAHAKLERGDFSNEGDKDAELFSMADGENDILNEVFSDAPSINVVDMFDQTEPELSEVNLGLDPLYAQAVQVKQRDPLTGKMKIANPQSRRLVWETCLSEFKTLAKVALRLIFLHSTSCGYKCKCSIMNLVCSHRHSRVGLEKAQKMVFVAAHAKLERGDFSNEGDKDAELFSMADGENDILNEVFSDAPSM 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 537556 541954 - Cp4.1LG13g00870.1 Cpe13g00069 479267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00069 911 PANTHER OSJNBA0013A04.12 PROTEIN 779 907 - -
Cpe13g00069 911 PANTHER PUTATIVE ISOFORM 1-RELATED 779 907 - -
Cpe13g00069 911 SUPERFAMILY Ribonuclease H-like 287 722 IPR012337 -
Cpe13g00069 911 PANTHER OSJNBA0013A04.12 PROTEIN 11 757 - -
Cpe13g00069 911 PANTHER PUTATIVE ISOFORM 1-RELATED 11 757 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00069 - - - cmax:111469173 1514.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00711 Cpe13g00069 CCT
Cpe05g00711 Cpe13g00069 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00283 Cpe-Chr5:1599383 Cpe13g00069 Cpe-Chr13:537556 1.81E-51 dispersed
Cpe13g00069 Cpe-Chr13:537556 Cpe13g00205 Cpe-Chr13:1567598 4.10E-45 dispersed
Cpe13g00069 Cpe-Chr13:537556 Cpe05g00711 Cpe-Chr5:4360019 2.75E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g228 . . . . . . . . . . . Cma15g01382 . Car15g01248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe13g00069 . . . . . . . . . . . . . . . . . .
Vvi16g494 Blo06g01097 . . . . . . . . . Cma02g01010 Cma15g01382 Car02g00754 Car15g01248 . Cpe05g00711 . . . . . . . . . . . . . . . . . . . . Csa05g00541 Chy09g01140 . . . . Bda15g00755 . Bpe12g00398 Bma08g00357 . . Cmo02g01025 Cmo15g01445 . . . . . Cpe13g00069 Bhi12g00576 . . . . . . . . . . . . . Lsi09g00543 . . Cme09g01496
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006259 1 4 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 0 2 1 1 1 1 1 2 1 1 4 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00069 Cpe_Chr13 FPKM 2.902813 2.880098 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0