Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00094 ATGCTCAAATTCATTCTTCTCGTTGCTTCGGCCGCCATTTTTGTTCTTCTTCTAATCTCCATCTTCTTCTTCTTCTTCCGCCATAAGCTCTCACTAACAGAGCATCGACACGACGTCGAGAGGCCCTGCAACGACGAACACAACAAAAAGGAACACACGCCGCCGCCATCGCCGCCGTCGTTGGCAACTTTTGAGGGTGGCGAGGATTTGACGATCGACGAGATTCTAGAAGCTCCGGGGGAAGTGATTGGCAAATCCCACTATGGAACTCTGTACAAAGCTTCGTTACAGAGCACCCAATCGACCCGGCTACTTAGATTCCTCCGGCCGGGTGCCGGTGGAGGAGAGTACGACGTCGTTCGGTTTCTGGGTTCGATTAGGCATAGGAATTTAGTGCCGATGCTAGGATTCTACGCCGGCGGGAGGGGTGAGAGGCTTCTGGTTCACCCGTTTTATGGGCAGGGGAATTTGGCGGAGTTGATTAGAGAACGAGAATCAGAGTCAAAAAATTGGGAGGTCATTAACAAAATCTCCCTCGGAATCGCAAGAGCCCTAGATCATCTCCACAACGGATTACAGAAACCAATACCTCATGGAAATCTCAAATCCAAGAACATTCTTCTCGATTCAAACTTTGAGCCGCACGTCTCCGATTTCGGCCTCCATCTCCTCCTCAACGCCGCCGCAACTCGAGAAATGCTCCAAGTTTCCGCCGCCTCCGGCTACAAGGCGCCGGAACTGATTAATATGAGCGACGCTGATGAACGAACAGACGTCTTCAGCTATGGCAAGATCTTACTCGAGTTGCTTTCTGCCAAAGAGACGGGCGGAGACGGCGGCGATTGCGGTGTTTCTGAAGAGCGGACTCTCCGATGCCTTCTTCAGATCGGCGAGGCCTGTTGTTCTTCTTCGCCGGATCTTCGGCCGGATTTCAAGGAAGTGATCGCGAAGATTACAGAAATCGGAAGGATTGAGATGGATTTCAGATGA 990 51.41 MLKFILLVASAAIFVLLLISIFFFFFRHKLSLTEHRHDVERPCNDEHNKKEHTPPPSPPSLATFEGGEDLTIDEILEAPGEVIGKSHYGTLYKASLQSTQSTRLLRFLRPGAGGGEYDVVRFLGSIRHRNLVPMLGFYAGGRGERLLVHPFYGQGNLAELIRERESESKNWEVINKISLGIARALDHLHNGLQKPIPHGNLKSKNILLDSNFEPHVSDFGLHLLLNAAATREMLQVSAASGYKAPELINMSDADERTDVFSYGKILLELLSAKETGGDGGDCGVSEERTLRCLLQIGEACCSSSPDLRPDFKEVIAKITEIGRIEMDFR 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 680553 682494 + Cp4.1LG13g00660.1 Cpe13g00094 479292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00094 329 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 4 276 - -
Cpe13g00094 329 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 286 322 - -
Cpe13g00094 329 Gene3D Transferase(Phosphotransferase) domain 1 72 327 - -
Cpe13g00094 329 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 286 322 - -
Cpe13g00094 329 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 276 - -
Cpe13g00094 329 ProSiteProfiles Protein kinase domain profile. 77 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00094 329 Coils Coil 325 329 - -
Cpe13g00094 329 SUPERFAMILY Protein kinase-like (PK-like) 80 318 IPR011009 -
Cpe13g00094 329 Pfam Protein tyrosine and serine/threonine kinase 81 274 IPR001245 GO:0004672|GO:0006468
Cpe13g00094 329 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00311 Cpe-Chr1:1762136 Cpe13g00094 Cpe-Chr13:680553 7.51E-94 dispersed
Cpe13g00094 Cpe-Chr13:680553 Cpe14g00178 Cpe-Chr14:998526 9.66E-106 dispersed
Cpe14g00179 Cpe-Chr14:1002018 Cpe13g00094 Cpe-Chr13:680553 3.40E-29 dispersed
Cpe13g00094 Cpe-Chr13:680553 Cpe05g00740 Cpe-Chr5:4535420 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62776 PF07714 PK_Tyr_Ser-Thr 3.10E-22 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00094 - - cpep:111783945 627.091