Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00095 GTTTTCTGGTTGCGAGGCACGGTGGACTTGGGTATCTCCGGCGGCGGATTCTGGCCGTGGAGGAGTTGCATCATTATGGAGGGGATGGAAGAGGAAGCCGATCTTATTTCACTGCCTTCCCCTTCTCCAGTTGTAGCTGTTGCTATCAGTGGGAAGAAAAACAGTAGATATATAATTAGGTGGTCGTTGGAAAAGTTTCTACCCGAGGGCATCATTAATTTCAAGCTGATACATGTCACCCCGAGGATTACTAGTGTCCCAACTCCAATGGGAAATTCAATTCCAGTTTCACAAGTTCGTGACGATGTCGCTGCAGCTTATAGGAAAGAAATCGGGTGGCAGACGAACGAAAAGCTTCTTCCATACACGAAGATGTTTGCTCAGAGAAAGGTTCAACTTGATGTTGTTACTCTTGAAGCAGATGATGTAGCAAATGCAATCATAGAAGAGGTCACAAAGTGTTCAATTAGCAAGCTTGTGATAGGAGTTTCATCACAGGGTTTTTTCTCAAGGAAACTAAATGGTCTATCCTCAAGAATATCAGCACTTGCACCAAGACATTGTACAGTCTATGCTATTTCAAAAGGACAATTAGCCTCAATCCGGCCGCCTAATATGGAGACAAACGTGAGCATTGATGATGCGAGTGAAGCAAGTTCTGCAAATAGCTACTTGAGCTATTCATCCAGCTCAGTTACTGATAGCAGTTCGAGCTTAACTACGTCCTACTCTGATTTCCCTTCTTCTTCCCCGTCCCTACCGTTACAACGATTTCAAGCTCTTTCAACCATCAACCAGACTCTTCTAACGACGAAATCAAGCCCCATTAATGCTGACCATTCTAGATGTCAATCTGTTGATATTGAGGATCAGGTGGATGGCATTCGTTCTTCTTCCTATGTTTCAGATTGCGCACGAACATTGAGTCGAGACTCTAGCTGTAAAAGTTCGTCGATGGATGGCCAATCTTGGGTTGATGAAGCTTCGTCCTCTGGCGCGTTCAGTGATCATGTTTCATGTGAAAGTCAGACGGATGTCACCTTTGAGCTTGAAAAGTTGAGAATCAAACTAAGACATGCGAGAGGAATGTACGCAATCGCTCAACGAGAGACGATCGACGCCTCTCGAAAGCTGAACCATCTAAATAAACAACGATCGGAGGACGCTAGGAAGCTCGACGAGATCAAGAACAGAGAGGCGGCTGCCAAAGAATTTGCAAGGGAAGAGAGAACGAAGCGTGAAGCTTTAAGAAGAGAAGCAAAGTACGTAAAAGAACGCGCCGAAAGAGAGGGCATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAAGATGCCAAAGAGAAAGGAAAGCATGAGAATGCTCTTGAAGGACCTCTGCAGCAATACCAACATTTTCAGTGGGAAGATATTGTTTCTGCAACATCATCTTTCTCAGAGGATCTTAAGCTTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGTTTACATCATACAACTGTAGCAGTAAAGGTTCTTCATTCTAGAGATGATCACAAAAAGACCCAATTTCTTCAGGAGCTCGAAATCTTGAGCAAAATCCATCATCCTCATCTACTACTCCTCCTCGGTGCATGTCCGGATATGAACTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACTGCAGAGGCAATACACCAGCAATTCCATGGTATGAGAGATTCCGAATAGCTTGGGAAATAGCCTCGGCTCTCGTCTTTCTTCACAGCTCAAAACCAAAACCGATAATCCACCGCGATCTTAAGCCAGCAAACATATTACTCGACCGAAACCTCGTGAGCAAAATCGGCGACGTCGGTCTATCTACCGTGTTCAACTCAGACCCATTAATGTCTACTGCATTCAAGAACAGTGGACCAGTTGGGACTCTTTGTTACATTGATCCCGAGTACCAACGAAGCGGATTAATCTCGCCGAAGTCGGATGTGTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCAGTTTAGATAAGGTTCTGGATATAGAGGCTGGACATTGGCCGGTGGAAGAAACATATGAACTAGCAAGATTAGGACTTCACTGTGCAGAGATGCAACGTAAAGATAGGCCTGACTTGAAGGATCATGTGCTTCCCTTGTTGCTGACACTGAAAAAGGTTGCTGATGAGGCTCGAAGTTTGGCCTCAAAAGTTCCAGCTCCGATTCCTAATCATTTCATCTGTCCAATTCTTCAGGACGTGATGAATGACCCGTGTGTAGCTGCAGATGGGTACACGTACGATCGTTGGGCGATCGAGAAGTGGCTACAAGAGAACGATAACTCACCGATCACGAAGTTGCCGTTGGCAGATAAGAATTTGATACCAAATTTCAGTCTTCTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAACTGA 2493 44.6 VFWLRGTVDLGISGGGFWPWRSCIIMEGMEEEADLISLPSPSPVVAVAISGKKNSRYIIRWSLEKFLPEGIINFKLIHVTPRITSVPTPMGNSIPVSQVRDDVAAAYRKEIGWQTNEKLLPYTKMFAQRKVQLDVVTLEADDVANAIIEEVTKCSISKLVIGVSSQGFFSRKLNGLSSRISALAPRHCTVYAISKGQLASIRPPNMETNVSIDDASEASSANSYLSYSSSSVTDSSSSLTTSYSDFPSSSPSLPLQRFQALSTINQTLLTTKSSPINADHSRCQSVDIEDQVDGIRSSSYVSDCARTLSRDSSCKSSSMDGQSWVDEASSSGAFSDHVSCESQTDVTFELEKLRIKLRHARGMYAIAQRETIDASRKLNHLNKQRSEDARKLDEIKNREAAAKEFAREERTKREALRREAKYVKERAEREGIYRKEAETKALQDAKEKGKHENALEGPLQQYQHFQWEDIVSATSSFSEDLKLGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKTQFLQELEILSKIHHPHLLLLLGACPDMNCLVYEYMENGSLEDRLYCRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDRNLVSKIGDVGLSTVFNSDPLMSTAFKNSGPVGTLCYIDPEYQRSGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCSLDKVLDIEAGHWPVEETYELARLGLHCAEMQRKDRPDLKDHVLPLLLTLKKVADEARSLASKVPAPIPNHFICPILQDVMNDPCVAADGYTYDRWAIEKWLQENDNSPITKLPLADKNLIPNFSLLSAIVEWNSRKN 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 682750 693003 - Cp4.1LG13g00880.1 Cpe13g00095 479293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00095 830 Gene3D Transferase(Phosphotransferase) domain 1 550 755 - -
Cpe13g00095 830 SMART Ubox_2 763 825 IPR003613 GO:0004842|GO:0016567
Cpe13g00095 830 SMART serkin_6 477 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00095 830 SUPERFAMILY RING/U-box 754 828 - -
Cpe13g00095 830 ProSiteProfiles U-box domain profile. 759 830 IPR003613 GO:0004842|GO:0016567
Cpe13g00095 830 ProSitePatterns Protein kinases ATP-binding region signature. 483 504 IPR017441 GO:0005524
Cpe13g00095 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 595 607 IPR008271 GO:0004672|GO:0006468
Cpe13g00095 830 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 45 185 - -
Cpe13g00095 830 Gene3D HUPs 45 191 IPR014729 -
Cpe13g00095 830 ProSiteProfiles Protein kinase domain profile. 477 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00095 830 Pfam Protein tyrosine and serine/threonine kinase 482 733 IPR001245 GO:0004672|GO:0006468
Cpe13g00095 830 Gene3D Phosphorylase Kinase; domain 1 446 549 - -
Cpe13g00095 830 PANTHER OS02G0152300 PROTEIN 42 826 - -
Cpe13g00095 830 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 42 826 - -
Cpe13g00095 830 CDD RING-Ubox_WDSUB1_like 764 804 - -
Cpe13g00095 830 CDD STK_N 44 196 - -
Cpe13g00095 830 Coils Coil 378 426 - -
Cpe13g00095 830 Pfam U-box domain 760 829 IPR003613 GO:0004842|GO:0016567
Cpe13g00095 830 SUPERFAMILY Protein kinase-like (PK-like) 457 738 IPR011009 -
Cpe13g00095 830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 759 830 IPR013083 -
Cpe13g00095 830 Coils Coil 350 370 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe13g00095 Cpe14g00102 CCT
Cpe13g00095 Cpe14g00102 ECH
Cpe09g00082 Cpe13g00095 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00605 Cpe-Chr12:6036061 Cpe13g00095 Cpe-Chr13:682750 9.51E-09 dispersed
Cpe13g00095 Cpe-Chr13:682750 Cpe04g00570 Cpe-Chr4:6129741 9.14E-130 dispersed
Cpe13g00095 Cpe-Chr13:682750 Cpe05g00741 Cpe-Chr5:4536729 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62777 PF07714 PK_Tyr_Ser-Thr 8.10E-40 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00095 - - csv:101217665 1293.49