Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00097 ATGGCTTGCAATGGAGGAGATTCGTATACGCAATCTTGTGTTTCGACTCAAGGTAGTGGAAGAAATGATCTGTACACGGAGCTATGGAGAGCTTGTGCAGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTCTTCTATTTCCCTCAGGGGCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTGTAATCTTTCCTCGAAGATTCTCTGTCGTGTAATTCATATTGAGCTGCTGGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTGATGCCGGAATCAAATCAAAATGAGCCTAACAGTCTAGATCCATGTCGTCCTGAACCAGCAAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTCAGCCACGGAGGCATCTGTTAACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAATGGAGAGATGCATGTTGGGGTGAGGCGCCGTGCTCGACAGCAGAGCAGCATGCCATCATCTGTGATATCAAGTCAGAGCATGCACCTAGGAGTGCTAGCAACTGCGTCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAAATTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCGGAGAGAAGGTTTTCAGGAACTATTATTGGAGCTACAGATATTTCACCTCATTGGCCTAATTCAAGTTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTCTAAGACCCGACAGGGTATCGCCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAACCGATTTCAAAAAACAAAAGGCCTCGACAATCAACTCCAGCTCATGATGGTGCTGATTTGCCTAAGCCAGCACTTTGGGATTCTGGACTGGCAGAGTCACATGATGGTAAACAGTCCAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGTCACCACAGAGAGACAGATGCTATCAGCAACAGGACATGTGTATCAAGAACACAGGCTGATGGGACCTGGTTATCTTCTACCCAATCCAATAGTCATAAACACCCAGTAAATGACATGGCCCAGGATTATAAAACTGTCCCTGGCTGTGGTTGGTCTTTTCTGTCAGGACCTTCAACCTCTCATTTGGTTAAGTTAAGTGATGAACAAATACTTGATTCCACTGAAAATGGGAGGAAAGGCGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTAAACTTCCTGCTGAGAAAGCATCTTATCAACCAAGCAGTGTGTCTAGTGACACGGATGGGCGCAGCAGTACCTTGTCAGTAGCTCAGTCCGATCCAAAATCTGACAACTTGGAGGTCTCTGTAGAAAGAAAATCAGAACCATTACAAGCATCTCTGAAGGAGACTCAAAGCAATCAAAGTAGCTCAGCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGATTTAACCATCTTAGAAGGCTATGACCAACTAATAGATGAGCTTGAGAAGATGTTTGATGTTAGGGGTCAGCTGTGTGCTCGTGATAAGTGGGAGATTGTATATACCGACGATGAAGGGGATATGATGCTTGTTGGAGACGACCCATGGGAAGAATTTTGTAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGACGTCAATAGAAGTCGAAGGGGCTGCCATAATCCCCGACTCCCCTGCAGTTTGA 1953 44.24 MACNGGDSYTQSCVSTQGSGRNDLYTELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLCNLSSKILCRVIHIELLADHESDEVYAQITLMPESNQNEPNSLDPCRPEPARPVVHSFCKVLTASDTSTHGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGEMHVGVRRRARQQSSMPSSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGATDISPHWPNSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVTGLSQPISKNKRPRQSTPAHDGADLPKPALWDSGLAESHDGKQSSNAAESRKGENNELCHHRETDAISNRTCVSRTQADGTWLSSTQSNSHKHPVNDMAQDYKTVPGCGWSFLSGPSTSHLVKLSDEQILDSTENGRKGETVASCRLFGIDLNHLAKLPAEKASYQPSSVSSDTDGRSSTLSVAQSDPKSDNLEVSVERKSEPLQASLKETQSNQSSSANTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLTSIEVEGAAIIPDSPAV 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 707914 715182 + Cp4.1LG13g00970.1 Cpe13g00097 479295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00097 650 Pfam AUX/IAA family 526 575 IPR033389 -
Cpe13g00097 650 Pfam AUX/IAA family 584 617 IPR033389 -
Cpe13g00097 650 MobiDBLite consensus disorder prediction 523 542 - -
Cpe13g00097 650 MobiDBLite consensus disorder prediction 318 374 - -
Cpe13g00097 650 SUPERFAMILY CAD & PB1 domains 530 615 - -
Cpe13g00097 650 MobiDBLite consensus disorder prediction 355 369 - -
Cpe13g00097 650 Pfam Auxin response factor 210 288 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe13g00097 650 ProSiteProfiles PB1 domain profile. 539 620 IPR000270 GO:0005515
Cpe13g00097 650 PANTHER AUXIN RESPONSE FACTOR 9 142 637 - -
Cpe13g00097 650 PANTHER AUXIN RESPONSE FACTOR 9 19 142 - -
Cpe13g00097 650 Gene3D - 245 318 - -
Cpe13g00097 650 Gene3D - 140 186 IPR015300 -
Cpe13g00097 650 MobiDBLite consensus disorder prediction 480 545 - -
Cpe13g00097 650 Gene3D - 534 627 - -
Cpe13g00097 650 MobiDBLite consensus disorder prediction 481 508 - -
Cpe13g00097 650 SUPERFAMILY DNA-binding pseudobarrel domain 119 213 IPR015300 -
Cpe13g00097 650 ProSiteProfiles B3 DNA-binding domain profile. 146 186 IPR003340 GO:0003677
Cpe13g00097 650 Pfam B3 DNA binding domain 142 185 IPR003340 GO:0003677
Cpe13g00097 650 CDD B3_DNA 127 184 IPR003340 GO:0003677
Cpe13g00097 650 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 142 637 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe13g00097 650 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 142 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00097 Cpe-Chr13:707914 Cpe17g01020 Cpe-Chr17:7722341 0 dispersed
Cpe08g01328 Cpe-Chr8:9539692 Cpe13g00097 Cpe-Chr13:707914 3.68E-114 transposed
Cpe01g00608 Cpe-Chr1:3504405 Cpe13g00097 Cpe-Chr13:707914 0 wgd
Cpe13g00097 Cpe-Chr13:707914 Cpe14g00449 Cpe-Chr14:2820937 0 wgd
Cpe13g00097 Cpe-Chr13:707914 Cpe05g00788 Cpe-Chr5:4895382 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50379 PF02309 AUX_IAA 6.90E-12 CL0072 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00097 K14486 - csv:101209208 1131.7