Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00108 CCGTCTTCGCGTCGCTTCTCGCTTTCACAAATCGAACAGCTGCTGGAGCTGGAAGGCCGCGAGTCCCCTGCTGAAGGAGGGAAAATTGTGCTAAAGCCCTCGAATCAGCAGCCAGTGGCGAGCGCAGTGGTGCACGAGGTCCTTGGACAGAGAACCCAGGATGTGGATGAGCCCATCATCGATTACATCATTAATGTTCTTGCGGACGAGGATTTCGAGTTCGGTGAGGATGGCGAAGGAGCTTTTGATGCTCTGGGTGAGCTTCTCGTTGGTGCTGGATGCGTTACCGACTTCACCGAATGCCGCACGGTTTGTAGTAGAATCTCAGAAAAGTTTGGGAAGCATGGACTGGTCAAGCCTAAACCAGCTGTGCGCAGTCTTGTAACACCCATGAGAATGAACGAAGGAATGGATGAAGAGCAGGTTCCAAAGAAGAAGCCGGAAGTTACTGATGGTCCTGTACTGACTGAGCGTGACCGATTAAAGCTAGAAAGGCGAAAGAGGAAGGAAGAGCGTCAAAGAGAGGCGCAATACCAAATGCATTTAGCTGAAATGGAGGCAGCCAGGGCAGGAATGCCTGTAATACGTGTTAATCACGATAGTAGCAGCGGACCTAATGTCAAAGATATTCATATGGAGAATTTCAATATTTCTGTTGGTGGTCGTGATTTGATTGTGGATGGTACAATCACACTGTCATTTGGAAGGCATTATGGTCTTATAGGAAGAAATGGTACGGGGAAGACAACTTTTCTTAGGGCAATGGCTATGCATGCCATTGATGGTATTCCTCAGAATTGCCAGATATTACATGTAGAGCAGGAAGTTGTTGGTGATGATACAACAGCATTGCAGTGTGTTTTAAACTCAGATATTGAGAGAACCCAACTTTTGGGGGAGGAAGCTCGTCTTCTAGCCCTACAAGATGCAAAAAGCAGTGCGGCTGTTGACAAAGATGGCATTGCACAAAGGCTTGAAGAGATATACAAAAGACTTGAGTTTATTGATGCTTATTCTGCAGAGGCACGTGCTGCTTCCATTCTTGCGGGCCTGAGTTTCTCCCCAGAAATGCAGCGGCAAGCAACCAAAGCATTTTCAGGAGGTTGGAGAATGCGTATTGCTCTTGCACGTGCGTTGTTCATAGAGCCTGATTTGTTGCTACTTGATGAACCCACAAACCATCTTGATCTTCATGCTGTTCTCTGGTTGGAATCCTACCTTGTGAAGTGGCCAAAAACAATCATAGTTGTTTCTCATGCTAGAGAATTTTTGAACACGGTAGTCACTGACATCCTTCATCTTCAAGGGCAGAAATTAACAACCTATAAAGGTAACTATGATACATTTGAGAGGACAAGAGAAGAGCAACTTAAGAACCAACAGAAAGCATTTGAGGCAAATGAACGGACACGAACTCATATGCAGACATTTATCGATAAGTTCAGATACAATGCGAAGAGGGCATCTCTTGTTCAATCAAGGATCAAGGCTCTGGAGCGAATTGGTCATGTGGATGAAGTTATAAATGATCCTGACTACAAATTTGAGTTCCCAACGCCAGATGACAGGCCAGGTCCACCTATAATAAGCTTCAGTGATGCATCATTTGGCTATCCAGGTGGACCCATATTATTCAAGAATCTGAATTTTGGGATTGATCTTGACAGTCGAATAGCAATGGTTGGTCCAAATGGCATTGGTAAATCAACCATCCTCAAATTAATTGCTGGGGAACTTCAACCCACCTCTGGAACTGTTTTTCGTTCAGCTAAGGTTCGAATAGCTGTCTTTAGTCAGCACCATGTTGATGGGTTAGACTTGTCTTCAAATCCACTTCTGTACATGATGCGTTGCTTTCCAGGCGTGCCGGAACAAAAGCTTCGAGCTCACCTAGGTTCATTTGGTGTAACTGGAAACCTTGCTCTTCAGCCTATGTACACACTATCTGGTGGTCAGAAAAGCAGAGTTGCTTTTGCGAAGATCACATTCAAGAAGCCGCACATTATATTGCTTGACGAGCCATCCAATCATCTGGATCTGGATGCGGTGGAGGCTCTGATTCAGGGCCTCGTCTTGTTTCAAGGAGGCATTCTCATGGTGAGTCACGACGAGCATCTGATATCGGGAAGTGTTGAGGAGCTGTGGGCAGTGTCAGATGGTAAAAGTAAGTTCAAGGAGTTTAGCTTGTACTTCGGCTCGGTGAAGAAGGAGTATCTGAAGGAAGTTGAGGATCAGGAGCTGGAAGCGGATTTAGTTTTGGGAGGCGATGAAGGAAAGGAATGTACTTACAGCAAGGGTTATATGAAGAGACAAGCCATTTTCTCATGTCTAACTTGTACCCCTGATGGAAATGCTGGAGTTTGCACAGCCTGTAGCTTGTCATGCCATGATGGACATGAGATTGTGGAATTATGGACCAAAAGAAACTTCAGGTGCGACTGTGGAAATTCAAAATTTGGAGATTTCATCTGCAAGCTGTTCTCAAACAAAGACGTAGAAAATGCCAACAACTCATATAATCATAATTTTAAAGGATCATACTGCATATGCAATCGCCCTTATCCCGATCCAGATGTCGAAGAGCAGGTGGAGATGATTCAGTGCTGTATGTGTGAGGATTGGTTCCATGAGGAACATCTTGGTCTCAGTTCCATAGATGAGATTCCAAGAGACGAAGAAGGGGAGCCCCTATACGAGGACTTTATATGCCCGGCGTGTTCGGAAATTTGTTCTTTCCTGATTCAATATCCTTCGTCTATATGGGCAGTGGGAAGGCACTCTGCTGGAAAGAACAGCTTGCTTAGTGAACTTCCTGAGAATAATAACACTCAAACTGATAGTTGTGTGCTTGAAACCTCTTCATCTGCTTCCATAATTGCTGAAAACAAGCCAATGTTTCTTTCAAAGAACTGGAGGAGTGCCTTGTGCAGATGTGAAAAATGCATCCATAATTACAAGCTGAAGAACATTAGTTTCTTGGTAGATGAAGAAGACTCCATTGCTGAGTATGAGAAAATAGCAAAGCAGAAGAGGGAAGAGAAGTTACAGGAACAAGAGGGTGCTGAGTTAAAGCTGTTTGATAACCTGGGCCATGTGGAGAAGATTGAGATTCTAAATGGCATTGCAGATATGAAGGATGAGATTCGTACATTCATGGAATCGTTCGACTCGTCGAAGCCGATTACATCTGCAGATATCCACCAGGTATTTGAGAATCTAGCTAAAAAGAGACGTCGTACTGAATGA 3246 44.49 PSSRRFSLSQIEQLLELEGRESPAEGGKIVLKPSNQQPVASAVVHEVLGQRTQDVDEPIIDYIINVLADEDFEFGEDGEGAFDALGELLVGAGCVTDFTECRTVCSRISEKFGKHGLVKPKPAVRSLVTPMRMNEGMDEEQVPKKKPEVTDGPVLTERDRLKLERRKRKEERQREAQYQMHLAEMEAARAGMPVIRVNHDSSSGPNVKDIHMENFNISVGGRDLIVDGTITLSFGRHYGLIGRNGTGKTTFLRAMAMHAIDGIPQNCQILHVEQEVVGDDTTALQCVLNSDIERTQLLGEEARLLALQDAKSSAAVDKDGIAQRLEEIYKRLEFIDAYSAEARAASILAGLSFSPEMQRQATKAFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLESYLVKWPKTIIVVSHAREFLNTVVTDILHLQGQKLTTYKGNYDTFERTREEQLKNQQKAFEANERTRTHMQTFIDKFRYNAKRASLVQSRIKALERIGHVDEVINDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPTSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWAVSDGKSKFKEFSLYFGSVKKEYLKEVEDQELEADLVLGGDEGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHEIVELWTKRNFRCDCGNSKFGDFICKLFSNKDVENANNSYNHNFKGSYCICNRPYPDPDVEEQVEMIQCCMCEDWFHEEHLGLSSIDEIPRDEEGEPLYEDFICPACSEICSFLIQYPSSIWAVGRHSAGKNSLLSELPENNNTQTDSCVLETSSSASIIAENKPMFLSKNWRSALCRCEKCIHNYKLKNISFLVDEEDSIAEYEKIAKQKREEKLQEQEGAELKLFDNLGHVEKIEILNGIADMKDEIRTFMESFDSSKPITSADIHQVFENLAKKRRRTE 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 771517 786522 + Cp4.1LG13g01130.1 Cpe13g00108 479306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00108 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 843 909 IPR013083 -
Cpe13g00108 1081 CDD ABCF_EF-3 210 438 - -
Cpe13g00108 1081 Pfam ABC transporter 546 676 IPR003439 GO:0005524
Cpe13g00108 1081 ProSitePatterns ABC transporters family signature. 648 662 IPR017871 GO:0005524
Cpe13g00108 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 721 IPR027417 -
Cpe13g00108 1081 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 210 461 IPR003439 GO:0005524
Cpe13g00108 1081 CDD ABCF_EF-3 529 721 - -
Cpe13g00108 1081 CDD PHD_UBR7 847 906 - -
Cpe13g00108 1081 SUPERFAMILY FYVE/PHD zinc finger 835 919 IPR011011 -
Cpe13g00108 1081 SMART PHD_3 847 907 IPR001965 -
Cpe13g00108 1081 SMART AAA_5 234 439 IPR003593 -
Cpe13g00108 1081 SMART AAA_5 554 721 IPR003593 -
Cpe13g00108 1081 Pfam Putative zinc finger in N-recognin (UBR box) 761 825 IPR003126 GO:0008270
Cpe13g00108 1081 PANTHER NON-TRANSPORTER ABC PROTEIN 156 731 - -
Cpe13g00108 1081 Pfam ABC transporter 432 512 IPR032781 -
Cpe13g00108 1081 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 529 744 IPR003439 GO:0005524
Cpe13g00108 1081 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 156 731 - -
Cpe13g00108 1081 SMART push_1 759 828 IPR003126 GO:0008270
Cpe13g00108 1081 Coils Coil 1070 1081 - -
Cpe13g00108 1081 Coils Coil 993 1013 - -
Cpe13g00108 1081 Pfam ABC transporter 230 393 IPR003439 GO:0005524
Cpe13g00108 1081 ProSiteProfiles Zinc finger UBR-type profile. 759 829 IPR003126 GO:0008270
Cpe13g00108 1081 ProSitePatterns ABC transporters family signature. 365 379 IPR017871 GO:0005524
Cpe13g00108 1081 Gene3D - 162 474 IPR027417 -
Cpe13g00108 1081 Gene3D - 492 750 IPR027417 -
Cpe13g00108 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 465 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00108 K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 - csv:101207993 1260.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00796 Cpe13g00108 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01087 Cpe-Chr10:6617617 Cpe13g00108 Cpe-Chr13:771517 9.39E-151 dispersed
Cpe13g00108 Cpe-Chr13:771517 Cpe16g00515 Cpe-Chr16:6115085 1.83E-08 dispersed
Cpe13g00108 Cpe-Chr13:771517 Cpe05g00796 Cpe-Chr5:4934059 0 wgd
Cpe13g00108 Cpe-Chr13:771517 Cpe05g00384 Cpe-Chr5:2177365 2.81E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g134 . . . . . . Bma07g01685 . . . Cma02g00914 Cma15g01281 Car02g00665 Car15g01155 . . Cpe05g00796 . . . . . . . . . . . . . . . Cone12ag0248 . . . Csa05g00199 Chy09g01298 . . Blo19g00368 . Bda09g00014 . . . . . Cmo02g00921 Cmo15g01350 . . . . . Cpe13g00108 Bhi12g00138 . . Lac11g1984 Hepe06g1474 . Lcy12g1566 Cla01g00182 Cam01g0186 Cec01g0183 Cco01g0186 Clacu01g0183 Cmu01g0179 Cre09g2326 Lsi09g00170 . . Cme09g01844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011577 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00108 Cpe_Chr13 FPKM 2.103761 4.006073 4.649769 4.286621 4.180744 2.421003 3.917692 5.716448 4.580764 5.385846