Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00109 ATGCTCCATTCTATCAAGTACCTCGCCGGCTCCCCCGGCCCCTCCGGCTTCGGCTCCAAATCCTCCGCCGAACACGTCACCGCCTCCGCCCTCCACCTCCCTTCCATCACCGCCATCATCACCGGCGCGACGTCGGGGATTGGAGCGGAGACGGCGCGGGTTCTTGCCAAACGCGGGGCTCGGTTAATCCTCCCGTCGCGGAACTTAAAGGCGGCCGAGGAAGCCAAGGCGCGGATCGAAGCTGAATGCTCTGGCTCGGAAATCATCGCCATGGCTCTGGATTTAAGCTCTCTGGCTTCCGTTAGAACCTTCGTTGCCCAATTTGAATCGCTGAATCTGCCGCTGAATCTCCTCATAAACAACGCCGGGAAATTCTCTCACGAGCACGCGATTTCGGAGGACGGGATCGAGATGACCTTCGCCACTAATTATTTGGGTCATTTTTTATTGACGAAATTGTTGGTGAATAAGATGGTGGAGACGGCGGCGGCGACGGGGATTCAGGGGCGGATTGTGAACGTGTCCTCGAGCATTCACGGCTGGTTCTCCGGCGACATTATCAAATATCTCGGCCAGATAAGCCGAAATAAATGCAGGAATTACGATGCGACACGTGCGTACGCGCTCTCTAAGCTTGCGAACGTTCTGCACACGCACGAACTTGCTCGCAGATTGAAGAAAATGGGAGCTAATGTCACTGTGAATTGCGTTCATCCGGGAATCGTTAGAACTCGACTCACTAGAGATCGTGAAGGTTTCATTACAGATTTGGTGTTCTTTATAACTTCTAAACTGTTGAAGACAATCCCTCAGGCGGCGGCAACCACATGCTATGTGGCGGCAAATCCAAGACTAAGTAACATCACCGGGAAATACTTCGCCGACTGCAACGAAGCCTCGCCGTCGAAAATTGCCGCTAGTCTGACGGAAGCCGCCCGTCTCTGGTCGGCGTCGGAGATCATGGTCAACACAAACTCAAAACTCGTATTTAATCCAAACAATGCCTTGGACTAA 1014 53.25 MLHSIKYLAGSPGPSGFGSKSSAEHVTASALHLPSITAIITGATSGIGAETARVLAKRGARLILPSRNLKAAEEAKARIEAECSGSEIIAMALDLSSLASVRTFVAQFESLNLPLNLLINNAGKFSHEHAISEDGIEMTFATNYLGHFLLTKLLVNKMVETAAATGIQGRIVNVSSSIHGWFSGDIIKYLGQISRNKCRNYDATRAYALSKLANVLHTHELARRLKKMGANVTVNCVHPGIVRTRLTRDREGFITDLVFFITSKLLKTIPQAAATTCYVAANPRLSNITGKYFADCNEASPSKIAASLTEAARLWSASEIMVNTNSKLVFNPNNALD 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 787034 789745 - Cp4.1LG13g01190.1 Cpe13g00109 479307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00109 337 PANTHER RETINOL DEHYDROGENASE 4 327 - -
Cpe13g00109 337 Pfam short chain dehydrogenase 37 177 IPR002347 -
Cpe13g00109 337 Gene3D - 26 327 - -
Cpe13g00109 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Cpe13g00109 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Cpe13g00109 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Cpe13g00109 337 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Cpe13g00109 337 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Cpe13g00109 337 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Cpe13g00109 337 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Cpe13g00109 337 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Cpe13g00109 337 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 327 - -
Cpe13g00109 337 CDD retinol-DH_like_SDR_c_like 37 315 - -
Cpe13g00109 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 300 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00109 - - - csv:101209698 538.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00909 Cpe-Chr8:7157464 Cpe13g00109 Cpe-Chr13:787034 1.51E-69 dispersed
Cpe13g00109 Cpe-Chr13:787034 Cpe14g01011 Cpe-Chr14:8514045 1.27E-116 dispersed
Cpe13g00109 Cpe-Chr13:787034 Cpe05g00798 Cpe-Chr5:4944227 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g726 . . . . . . . . . . . . Car02g00817 . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01374 . . . . . . . . . . . . . . . . . Cpe13g00109 . . . . . . . . . . . . . . Lsi09g00092 . . Cme09g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002525 1 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 1 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00109 Cpe_Chr13 FPKM 12.602623 11.493242 11.006772 10.829604 23.152895 23.563471 22.715603 12.150283 11.650504 11.559114