Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00114 ATGGATTCGTCACCTCCTTCAAAACGCCGGCGTAAGAACCTCAATTTTGATGATCCCTTTGAGACCTTACTTGCAACATCTTCCTCCGTTAATAGATTGTCCCCTGTCGTCGTTTTTGCTCATGGTGCTGGTGCCCCTTCTTCTTCAGAATGGATCGTCAGATGGAAAGATATGTTAGGCAAGGCACTGCATGCTGTTGAAGTTGTCACCTTTGACTATCCATACATTTCTGGTGGAAGGAAATCTCCTCCCAAGGCAGAAAAATTGGTCCCATATCATACAGAAATTGTCAAAAGGGAGATTGCAAGGTACCCTGGGCACCCTTTGATTTTGGCGGGTAAATCGATGGGTTCGAGAGTAAGTTGCATGGTAGCTTGTGAGGAAGGCATTCATGCTTCTGCAATTATTTGCTTGGGGTATCCCTTGAAGGGCTTGAAAGGGGATGTGCTAGACCAGACACTGTTGCACGTTACCGTTCCTATCATGTTTGTACAGGCCATGTTGGATAGAGTTTGCTCTTTGGCACCTATGCCGTATAACTATCGTAATGCTTTGTTGAGAACGGGTAGCAGGGATGCTCTGTGTCCTTTAGAGAAGCTGGAGGATATTCGGAAGAGGATGAGATCAATCAGTGGGTTACATGTTATTGATGGTGGTGACCATTCTTTCCAGATTTCAAAGAAATACCTTCAAGCCAAAGGTTTGAGTAAAGATGAAGCCGAAAATCTTGCTGCTCAAGCCCTTGCTACTTTTGTTTCTGGGTTTCTTGGATGGCTTTAG 780 44.87 MDSSPPSKRRRKNLNFDDPFETLLATSSSVNRLSPVVVFAHGAGAPSSSEWIVRWKDMLGKALHAVEVVTFDYPYISGGRKSPPKAEKLVPYHTEIVKREIARYPGHPLILAGKSMGSRVSCMVACEEGIHASAIICLGYPLKGLKGDVLDQTLLHVTVPIMFVQAMLDRVCSLAPMPYNYRNALLRTGSRDALCPLEKLEDIRKRMRSISGLHVIDGGDHSFQISKKYLQAKGLSKDEAENLAAQALATFVSGFLGWL 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 822107 824539 + Cp4.1LG13g01120.1 Cpe13g00114 479312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00114 259 PANTHER KAT8 REGULATORY NSL COMPLEX SUBUNIT 3/TESTIS-EXPRESSED SEQUENCE 30 PROTEIN-RELATED 187 254 - -
Cpe13g00114 259 Pfam Alpha/beta hydrolase domain 36 174 IPR046879 -
Cpe13g00114 259 SUPERFAMILY alpha/beta-Hydrolases 34 177 IPR029058 -
Cpe13g00114 259 PANTHER KAT8 REGULATORY NSL COMPLEX SUBUNIT 3/TESTIS-EXPRESSED SEQUENCE 30 PROTEIN-RELATED 11 175 - -
Cpe13g00114 259 PANTHER TESTIS DEVELOPMENT PROTEIN PRTD 187 254 IPR026555 -
Cpe13g00114 259 PANTHER TESTIS DEVELOPMENT PROTEIN PRTD 11 175 IPR026555 -
Cpe13g00114 259 Gene3D alpha/beta hydrolase 34 234 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00114 K07020 K07020; uncharacterized protein - csv:101210114 421.779
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00804 Cpe13g00114 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00114 Cpe-Chr13:822107 Cpe05g00804 Cpe-Chr5:4986967 7.87E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g119 . . . . . . Bma07g01682 . . . . Cma15g01275 Car02g00655 Car15g01149 . . Cpe05g00804 . . . . . . . . . . . . . . . . Cone6ag0845 Cone9ag0842 . Csa05g00209 Chy09g01289 . . Blo19g00364 . Bda09g00017 . . . . . Cmo02g00912 Cmo15g01344 . . . . . Cpe13g00114 Bhi12g00152 . . Lac11g2004 Hepe06g1483 . Lcy12g1574 . . . . . . . . . . Cme09g01834
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009503 1 1 1 1 0 1 2 1 1 1 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00114 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.460479 1.010386 1.606843 0.0 0.438963 0.669952