Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00118 ATGAAGTTCAATTGGAAGCTACTGTTTCCTTTCAAAAACAACCAGTTACTGATGCTAAAGCTCCTTCTTCCTATTCTCTTAATGGGTATTGCTTTTCGTTTCCTCTTCGCTGGTTTTGGTGACATTCCAGCGAATTTGGATACCTCATTAACCGAGAAGAATATCTTTTCTGCGATTTTGGATACTCATTTTGAAGCTTGGATGAATAAGATTCAGAAACCACTTGAAGGGAAGTGTAATCTTTTTGTTGGAGAGTGGATCCCAAATCCATCAGGTCCTGTGTACAACAATGAGAGCTGCCCCCATATTGAAGCCCATCAAAATTGTATGAAGAATGGGCGGCCAGATACAGAATACCTATACTGGAGTTGGCAGCCACGGGATTGTCAACTACCGAAGTTCGATCCACAAAGATTTCTGGAGACGATGAGGGACAAAACATGGGCGTTGATCGGAGATTCGATATCTCGAAACCATGTTCAATCAATGCTGTGCATGCTATCAACGGTGGAAGTAGCTATTTATATCTACCATGATGAAGAATTCAAGTCTAAAAAATGGTGGTTTCCATCATACAACTTCACCATTTCAGTTGTTTGGTCACCTTTCCTAGCAGAAGCAGCTATATTTGAAGATTATAACGGTGTGTCTACGTCAGAAGTCGAGCTGCATCTCGACGTACTCGATAAGAAATGGACAGACGAGTTCCACCGGCTAGACTACATGATAATTTCTAGTGGTAAGTGGTTTGTGAAACCTGCAATCTACTATGAGAAGAACAAAGTATTAGGCTGCCATTCTTGCCCAAGAAAGAATTATACAGAGCTAGGTATTGAATTTGCCTATCGTAGAGTTCTCAGGTCTGCATTGAACTTTATTCTAACATCCAAGCATAAGGGTATGATATTCATGAGAGCATCAACCCCTGACCACTTTGAAAATGGGGAGTGGTCGACCGGAGGAACGTGCGATCGAAGGGCGCCGTTTAAAGAAGGTGAGATTGAACTGAAAGATCTGACCAAAATTCTGCGCAACATCGAGTTGGAGGAGATCAAGAAGGCAGAAGCAAAAGCGTCTCGAGTTGGGTTGAATCTTAAACTCCTTGACCTGACCGAGCTTTCATTGTTGAGGCCGGATGGTCATCCGGGCTCATACAGAGAGTTCCAACCATTTGCACATGACAAAAATGCAAAAGTGCAGACAGATTGCTTGCATTGGTGCCTACCCGGACCGATCGACGCATGGAACGACGTGATCATGGAGATGGTGCTAAACGAATAG 1281 43.17 MKFNWKLLFPFKNNQLLMLKLLLPILLMGIAFRFLFAGFGDIPANLDTSLTEKNIFSAILDTHFEAWMNKIQKPLEGKCNLFVGEWIPNPSGPVYNNESCPHIEAHQNCMKNGRPDTEYLYWSWQPRDCQLPKFDPQRFLETMRDKTWALIGDSISRNHVQSMLCMLSTVEVAIYIYHDEEFKSKKWWFPSYNFTISVVWSPFLAEAAIFEDYNGVSTSEVELHLDVLDKKWTDEFHRLDYMIISSGKWFVKPAIYYEKNKVLGCHSCPRKNYTELGIEFAYRRVLRSALNFILTSKHKGMIFMRASTPDHFENGEWSTGGTCDRRAPFKEGEIELKDLTKILRNIELEEIKKAEAKASRVGLNLKLLDLTELSLLRPDGHPGSYREFQPFAHDKNAKVQTDCLHWCLPGPIDAWNDVIMEMVLNE 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 836274 838897 - Cp4.1LG13g01160.1 Cpe13g00118 479316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00118 426 Pfam PMR5 N terminal Domain 78 130 IPR025846 -
Cpe13g00118 426 Coils Coil 329 349 - -
Cpe13g00118 426 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 11 425 IPR029962 GO:0016413
Cpe13g00118 426 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 24 11 425 - -
Cpe13g00118 426 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 131 422 IPR026057 GO:0016740
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00118 - - - mcha:111015338 709.138
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00379 Cpe13g00118 CCT
Cpe05g00379 Cpe13g00118 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00118 Cpe-Chr13:836274 Cpe17g01021 Cpe-Chr17:7731274 4.72E-172 dispersed
Cpe13g00118 Cpe-Chr13:836274 Cpe05g00379 Cpe-Chr5:2149689 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g111 . . . . . . Bma07g01681 . . . Cma02g01395 Cma15g01270 Car02g01174 Car15g01145 . . Cpe05g00379 . . . . . . . . . . . . . . Cone8ag0253 . . . . Csa05g00214 Chy09g01285 . . . Bda07g00465 Bda09g00018 . Bpe11g00641 . . . Cmo02g01430 Cmo15g01340 . . . . . Cpe13g00118 Bhi12g00160 . . Lac11g2012 Hepe06g1489 . . Cla01g00198 Cam01g0204 Cec01g0198 Cco01g0203 Clacu01g0200 Cmu01g0196 Cre09g2311 Lsi09g00186 . . Cme09g01829
Vvi16g501 Blo06g01099 Blo15g00143 . . . Bpe07g00966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe12g00401 Bma08g00355 Bma12g01149 . . . . . . . . Cpe13g00118 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004213 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 4 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00118 Cpe_Chr13 FPKM 78.258766 88.985588 14.554354 15.184761 13.874793 14.543118 14.242338 18.248768 18.021851 19.141966