Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00119 ATGCCGGGAATTCGTGCTCGGAGCAGGTTAGAGGCGAGTTCTTATCGGGCAGGCAAGTACGTGAAAGAATGTGAAGTTAGTCTGGAGAGAATGGAAGAAATGAGTGAGGAAATGACGCTATTGGAGGCGGCGGAGGATGCACATGTCCAAAATAAGGTTAGGCAAGATGCTCAGGAGAATGAGTTTTCACTGAAACCTGAAAATACCAACGTGGTTGAATCACAAGAAATGCTTATACCCATTGACGGTGGCTATTCACAGGATTATCCTCATGAATTTACTGAAATTTTAGAGGGTAAGAATCTGAGTAGGTGTAAAAACACTGTGAAATTATCTGATCAACCAGAGTGCAGTCCTCAGTGTATGGATGATGCTGGCGTAATGGTTGAAGAGCTAACTGTGAAAAATCACAACGGTTCCAATTTAGCAATTATTGGTCCATCGAACAATAGAGCACGACTGCTTTCTAGGCATAATCAGTGGCAGCATCTTTACCAGCTGGCAAGTGGTTCAGGCAGTGGGAGTTCACGTATGGATACTTCTTACAAGAACAATGGTCAGACAGTAACCCCTGGCATAGAGACCGGTGGGTACACATCTTTTCCTGAGGCTTTCGCTGGAAGAGCCAATCGTAATGATTGTGGAGAGAAATTGGAAGAAACGAAGGCTATTGACAATAAGGGTGGTGATGCTCATGGCAGCATTCGGACCAAGATTCTATCAAAATCGGGCTTTCCTGAATTTTTTGTTAAAAATACCTTGAAGGGGAAGGGAATCATTCGTAGAGGTATACCACTGGAGGGCTTTAATGTAGAACATAGAAACCCTAAGAATGCAAGGAATGCTGGTGGCATTACATTGGCATCTGACTCATCATTACAGCATGACATTAAGCCTGTCATACCCTCCTTGAATAGGAAATCTGAGCGTAAATTTCGGGGTTCTGCTTTAGATGGCATTAGTCTGAGAGATTGGCTTAAAGTTCCCCACCACAAAGTAAATAAAAGCGAATGCTTGTATATATTTAAGCACGTAGTGGAGCTGGTGGATCGTTATCATGCACGGGGGGTTTTGTTGCATGACTTACGTCCACGTTCTTTCAGGATATTGACGAAGAACGAGATAAGGTACTTTGGAACTTTTATTCAATTAAAAACAGCGGAAAGTCTAATGGTTAAAGATAGTCAGTGTTCAGATAGCCATCAGACTCAGAAAAGGCCGTTAGAGCAAGGGAACTTTCTGTCATTTGGTGTATCTCCAAAAAAACAAAAAGATGTCCAGAATATGAGTCTTATGGCCCAACATCCTCACTTTCCTTTAGAATCTGGTGTCAATCTTGAAACTGCAAATACGAGGGTCTGCAATAAGAATGCTTCGGAAAATTATAATGAACATTTTGCTGAACAGGGGGTTAGGAGCAAGCCTGCTGGCCCTTGTGCATACGATTCTTCCCTGACTCCAATAAGTGGCCTATTGGAAGAGAAGTGGTATGCAAGTCCAGAGGAACTTAATGCAGGATGCTGCTCACCTAAATCAAATATATTCTCTCTTGGTGTTCTTCTTTTTGAGTTACTTGGAAAGTTTGAATCAGATGGCGCACTTGTTGCAGCTATGTCAAATTTGAGGGAGAGGATTCTTCCGCCTAACTTTCTAGCAGATAATTTGAAGGAAGTTGGGTTTTGTCTTTGGCTACTTCATCCTGAGCCTGCATCTCGTCCAACCACAAGGGAAATTTTAGAATCAGAACTAATCAATGGAATAGCAAATGTTCCGGCAGCAGAGCTTTCAACATCTATTGACGAGGAAGATGCTGAATCAGAGTTATTATTGCAGTTTCTCACATCATTGAATGAACAAAAGCGGAAACATGCCTCGAAGTTGATGGAAGACATACGGTATTTAGAATCAGATATCGAAGAAGTCAATAAAAGGCACAGTTCAGCCAAAGCCTTGGATAAATCTAGCTTGTCTAATACCCTGAATGGAAGGGATAGTTCGATCTATCATGGAGGATGTCTAAACTCAGATGGGTTCTCGCAGGTGTATACAATATCACATATCAATGAAGAGAGAATTGTAAAAAATATAAGTCAGCTTGAAAGTGCTTATTTTTCCATGAGATCAAAAGTAGATCCTTCTAAGAATGACCCAGCAATTCGGACAGATAAAGATTTACTGAGAGCTCGTGAAAACTGCTATCTAATACAAAAAGATGATGAGAGGAGTCACGGTGATCGTCTGGGTGCCTTTTTTGATGGGTTTTGCAAGTATTCTCGCTATAGCAAGTTCGAAGTACGTGGGGTACTGAGAAACGGTGATTTTAACAGTTCCTCGAATGTAATCTGTTCCTTGAGTTTTGATCGGGATGAGGAATATTTTGCTGCTGCTGGAGTGTCAAAGAAAATAAGGATTTTTGAGTTTAACTCACTCTTTAGTGATTCGGTCGATATTCACTATCCCGCAGTTGAAATGTTTAATAGATCAAAGCTTAGCTGTGTTTGCTGGAATAGCTACATCAGGAATTATCTGGCTTCAACTGACTACGACGGTGTTGTTAAGTTGTGGGATGCAACTGTAGGTCAAGAGGTTTCTCAATTCAAAGAACACGAGAAGAGGGCGTGGTCCGTTGACTTTTCACAAGTTCATCCTACAAAATTGGCCAGTGGAAGTGACGATTGTGCTGTAAAACTTTGGAGCATAAATGAGGCATGCCTTCTCTCTCTCTCTCTCTTGAACCTTGTGGATTATTTTGCTTTTACTTTTATTTGCAATAAAAAATGTTTGGGCACAATCAGGAACATAGCAAATGTCTGCTGTGTTCAGTTCTCTGCTCACTCAACTCATTTGCTAGCTTTTGGGTCTGCCGATTACAGAACCTATTGCTTTGATCTACGTAATACTAAAGCCCCCTGGTGTGTGTTGGGTGGGCATGAGAAAGCTGTAAGCTATGTGAAATTCTTGGACTCGGAGACCCTTGTTTCTGCGTCCACAGACAACACATTGAAGCTGTGGGACCTTAATAGAACCAATCCTACTGGCTTGTCTACCAATCCTTGTAGTTTAACTCTCAGTGGCCACACTAATGAAAAAAATTTCGTGGGTCTATCCGTTTTCGATGGCTACATCGCTTGTGGTTCAGAAACAAATGAAGTATATGCGTACCATAGATCTCTGCCCATGCCAATGACTTCCTATAAGTTCGGTTCTGTCGACCCTATTTCGGGTAAAGAGACGGAGGACGACAATGGACAATTCGTTTCAAGTGTATGCTGGAGAGGAAAATCTGACATGGTTGTAGCAGCCAACTCAAGCGGGTGTATAAAAGTACTGCAAATGGTTTGA 3342 41.77 MPGIRARSRLEASSYRAGKYVKECEVSLERMEEMSEEMTLLEAAEDAHVQNKVRQDAQENEFSLKPENTNVVESQEMLIPIDGGYSQDYPHEFTEILEGKNLSRCKNTVKLSDQPECSPQCMDDAGVMVEELTVKNHNGSNLAIIGPSNNRARLLSRHNQWQHLYQLASGSGSGSSRMDTSYKNNGQTVTPGIETGGYTSFPEAFAGRANRNDCGEKLEETKAIDNKGGDAHGSIRTKILSKSGFPEFFVKNTLKGKGIIRRGIPLEGFNVEHRNPKNARNAGGITLASDSSLQHDIKPVIPSLNRKSERKFRGSALDGISLRDWLKVPHHKVNKSECLYIFKHVVELVDRYHARGVLLHDLRPRSFRILTKNEIRYFGTFIQLKTAESLMVKDSQCSDSHQTQKRPLEQGNFLSFGVSPKKQKDVQNMSLMAQHPHFPLESGVNLETANTRVCNKNASENYNEHFAEQGVRSKPAGPCAYDSSLTPISGLLEEKWYASPEELNAGCCSPKSNIFSLGVLLFELLGKFESDGALVAAMSNLRERILPPNFLADNLKEVGFCLWLLHPEPASRPTTREILESELINGIANVPAAELSTSIDEEDAESELLLQFLTSLNEQKRKHASKLMEDIRYLESDIEEVNKRHSSAKALDKSSLSNTLNGRDSSIYHGGCLNSDGFSQVYTISHINEERIVKNISQLESAYFSMRSKVDPSKNDPAIRTDKDLLRARENCYLIQKDDERSHGDRLGAFFDGFCKYSRYSKFEVRGVLRNGDFNSSSNVICSLSFDRDEEYFAAAGVSKKIRIFEFNSLFSDSVDIHYPAVEMFNRSKLSCVCWNSYIRNYLASTDYDGVVKLWDATVGQEVSQFKEHEKRAWSVDFSQVHPTKLASGSDDCAVKLWSINEACLLSLSLLNLVDYFAFTFICNKKCLGTIRNIANVCCVQFSAHSTHLLAFGSADYRTYCFDLRNTKAPWCVLGGHEKAVSYVKFLDSETLVSASTDNTLKLWDLNRTNPTGLSTNPCSLTLSGHTNEKNFVGLSVFDGYIACGSETNEVYAYHRSLPMPMTSYKFGSVDPISGKETEDDNGQFVSSVCWRGKSDMVVAANSSGCIKVLQMV 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 841312 848614 + Cp4.1LG13g01090.1 Cpe13g00119 479317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00119 1113 Coils Coil 624 644 - -
Cpe13g00119 1113 SUPERFAMILY Protein kinase-like (PK-like) 319 588 IPR011009 -
Cpe13g00119 1113 Gene3D - 750 1113 IPR015943 GO:0005515
Cpe13g00119 1113 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 974 1007 - -
Cpe13g00119 1113 PANTHER PROTEIN SPA1-RELATED 2 31 903 IPR044630 GO:0009640
Cpe13g00119 1113 PANTHER PROTEIN SPA1-RELATED 2 922 1113 IPR044630 GO:0009640
Cpe13g00119 1113 Gene3D Transferase(Phosphotransferase) domain 1 320 597 - -
Cpe13g00119 1113 PANTHER PROTEIN SPA1-RELATED 2 31 903 - -
Cpe13g00119 1113 PANTHER PROTEIN SPA1-RELATED 2 922 1113 - -
Cpe13g00119 1113 ProSiteProfiles Trp-Asp (WD) repeats profile. 974 1014 IPR001680 GO:0005515
Cpe13g00119 1113 SMART WD40_4 924 963 IPR001680 GO:0005515
Cpe13g00119 1113 SMART WD40_4 818 856 IPR001680 GO:0005515
Cpe13g00119 1113 SMART WD40_4 967 1005 IPR001680 GO:0005515
Cpe13g00119 1113 SMART WD40_4 762 806 IPR001680 GO:0005515
Cpe13g00119 1113 SMART WD40_4 1072 1111 IPR001680 GO:0005515
Cpe13g00119 1113 SMART WD40_4 1016 1055 IPR001680 GO:0005515
Cpe13g00119 1113 SMART WD40_4 859 899 IPR001680 GO:0005515
Cpe13g00119 1113 PRINTS G protein beta WD-40 repeat signature 886 900 IPR020472 -
Cpe13g00119 1113 PRINTS G protein beta WD-40 repeat signature 992 1006 IPR020472 -
Cpe13g00119 1113 PRINTS G protein beta WD-40 repeat signature 843 857 IPR020472 -
Cpe13g00119 1113 ProSitePatterns Trp-Asp (WD) repeats signature. 992 1006 IPR019775 -
Cpe13g00119 1113 ProSiteProfiles Trp-Asp (WD) repeats profile. 841 865 IPR001680 GO:0005515
Cpe13g00119 1113 SUPERFAMILY WD40 repeat-like 774 1111 IPR036322 GO:0005515
Cpe13g00119 1113 ProSiteProfiles Protein kinase domain profile. 221 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00119 1113 ProSiteProfiles Trp-Asp (WD) repeats profile. 866 908 IPR001680 GO:0005515
Cpe13g00119 1113 Pfam WD domain, G-beta repeat 860 899 IPR001680 GO:0005515
Cpe13g00119 1113 Pfam WD domain, G-beta repeat 973 1005 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00119 K16240 SPA1; protein suppressor of PHYA-105 1 - csv:101211350 1853.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00378 Cpe13g00119 CCT
Cpe05g00378 Cpe13g00119 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00702 Cpe-Chr2:4434128 Cpe13g00119 Cpe-Chr13:841312 1.58E-166 dispersed
Cpe02g00956 Cpe-Chr2:8213977 Cpe13g00119 Cpe-Chr13:841312 9.06E-103 dispersed
Cpe05g01530 Cpe-Chr5:10534707 Cpe13g00119 Cpe-Chr13:841312 2.71E-25 dispersed
Cpe06g00688 Cpe-Chr6:4281224 Cpe13g00119 Cpe-Chr13:841312 9.17E-163 dispersed
Cpe13g00119 Cpe-Chr13:841312 Cpe16g00748 Cpe-Chr16:7517443 3.15E-103 dispersed
Cpe13g00119 Cpe-Chr13:841312 Cpe05g00378 Cpe-Chr5:2139864 5.12E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00119 Cpe_Chr13 FPKM 6.43586 6.768941 12.143707 13.046442 7.300582 6.931886 7.375633 20.506441 19.251377 20.536776