Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00124 TTTATTATTATTATTATATATTTTTTGGAATATATAAGGTGGTTTTGTAAATTATTGCAAATCCTCTCTTCTCTCAGGCAAAACAACAAACACGCAGGAGGATCTCAAGAGATTCCACTCTTTTGGATTTTGGTGATGGCTTCGAAGCGAATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATAATGGGTCCTCCTGACAGTCCATATGCAGGAGGAGTGTTTCTTGTCAACATTCATTTCCCTCCAGATTATCCATTTAAACCACCCAAGGTTGCATTCAGAACAAAGGTCTTCCATCCCAATATCAACAGCAACGGCAGCATATGCCTTGACATACTTAAGGAACAGTGGAGTCCTGCACTAACCATTTCCAAGGTGTTACTTTCGATCTGCTCGCTGCTAACAGACCCGAATCCTGATGACCCTTTGGTGCCAGAGATCGCGCACATGTACAAGACTGACAGAAGCAAGTACGAGGCAACTGCGAGAAGCTGGACTCAGAAGTATGCTATGGGTTAG 582 43.81 FIIIIIYFLEYIRWFCKLLQILSSLRQNNKHAGGSQEIPLFWILVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 866864 875712 - Cp4.1LG13g01170.1 Cpe13g00124 479322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00124 193 CDD UBCc 48 187 IPR000608 -
Cpe13g00124 193 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 48 190 - -
Cpe13g00124 193 PANTHER BNAA01G32320D PROTEIN 48 190 - -
Cpe13g00124 193 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 46 192 IPR000608 -
Cpe13g00124 193 SUPERFAMILY UBC-like 42 192 IPR016135 -
Cpe13g00124 193 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 119 134 IPR023313 -
Cpe13g00124 193 SMART ubc_7 49 192 - -
Cpe13g00124 193 Pfam Ubiquitin-conjugating enzyme 50 186 IPR000608 -
Cpe13g00124 193 Gene3D Ubiquitin Conjugating Enzyme 43 193 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00124 K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23] - csv:101210687 313.538
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00618 Cpe13g00124 CCT
Cpe05g00618 Cpe13g00124 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00618 Cpe-Chr5:3756610 Cpe13g00124 Cpe-Chr13:866864 1.17E-107 dispersed
Cpe13g00124 Cpe-Chr13:866864 Cpe16g00694 Cpe-Chr16:7158630 3.44E-103 dispersed
Cpe10g01008 Cpe-Chr10:5787787 Cpe13g00124 Cpe-Chr13:866864 7.40E-85 transposed
Cpe13g00124 Cpe-Chr13:866864 Cpe14g00064 Cpe-Chr14:357726 1.53E-107 wgd
Cpe13g00124 Cpe-Chr13:866864 Cpe05g00372 Cpe-Chr5:2116345 1.56E-109 wgd
Cpe13g00124 Cpe-Chr13:866864 Cpe09g00049 Cpe-Chr9:296338 1.53E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g99 Blo02g01137 . . Bda08g00487 Bpe05g00677 . . . . . . . Car02g01180 . . . Cpe05g00618 . . . . . . . . . . . . . . . Cone12ag0264 Cone6ag0831 Cone9ag0830 . Csa05g00222 Chy09g01278 . . . Bda07g01917 . . . Bma05g00850 . . Cmo02g01437 . . . . . . Cpe13g00124 Bhi12g00166 . . Lac11g2026 Hepe06g1497 . Lcy12g1590 . . . . . . . Lsi09g00193 . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00124 Cpe_Chr13 FPKM 0.0 0.179575 0.312269 0.296955 0.131888 0.0 0.0 1.922548 2.03699 1.978028