Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00134 ATGTTTCCAGTTCGTAGATTGATGATGGCAGCTGCATCGAATTCTGTGTCGCTGAAGCACGGTCTCTCTCTATGGTGTCCGCACTCTGGTTCCTTTTCTAGAGCTCAGCCGAAATCTTCTGTTTCTTTCAGATCTTTCCGGAGAAGCTACGTTGTTGCCTCCTCGGATTTCGCTAACGAGAATAGAGAGTTTGTGATTGTTGGTGGTGGCAATGCTGCTGGTTATGCGGCTCGTACTTTCGTCGAGCACGGGATGGCGGATGGACGGCTTTGTATAGTAACTAAGGAGGCAGTTGCGCCGTACGAGCGTCCGGCTCTGACAAAAGGTTACTTGTTTCCTCTTGATAAAAAACCAGCTCGCTTGCCTGGGTTTCATACTTGTGTTGGATCTGGTGGGGAAAGACAAACGCCAGAATGGTACAAGGATAAAGGTATTGAGACATTTTATCAAGATCCAGTTACGGGTATTGACATAGAAAACCAAACCCTGAAAACTAATTCGGGAAAACTGCTCAAGTATGGAGCGCTTTTAATAGCAACAGGATGTACAGCCTCGAGATTTCCAGATAGAATTGGGGGTGGGCTACCGGGTGTTCACTACATCCGAGATGTTGCAGATGCAGATTCACTAATTTCCTCATTGGAGAAAGCAAAAAAGGTGGTTATTGTTGGTGGTGGTTACATTGGTATGGAGGTCGCTGCGGCAGCTGTTGGTTGGAAACTTGATACAACAATCATATTTCCCGAGAATCATCTATTGCAACGACTTTTTACTCCTTCGCTGGCCAGGAAATATGAAGAATTTTACCAGGAGAATGGTGTCAAATTCTTAAAGGGGGCCTCCATAAAAAATTTGGAAGCTGGTGCAGATGGTCGGGTCTCTTCTGTTAGACTTGAGGATGGATCCTCCATTGAAGCAGACACGGTAGTAATAGGCATTGGTGCGAAGCCTGCTGTCAGTCCGTTTGAGCAAGTGGGGTTGAATAGCACTGTTGGCGGCATACAGGTTGATGGCCTGTTCAGAACTAAGATACCAGGAATTTTTGCAGTTGGAGATGTGGCAGCATTCCCGTTAAAGATAATGACTGTGATTCAAATAAAACAGCTGTATGATCGTGTAACTCGGGTCGAACATGTGGATCATGCTCGTCGATCGGCTCAGCATTGTGTCAAATCCTTACTAACTGCTCATACTCAAATATACGATTATCTTCCATATTTCTACTCAAGGGTGTTTGAATACGAAGGGAGCCCTAGGAAAATATGGTGGCAATTTTTTGGGGATAATGTTGGCGAGACAGTCGAAATTGGGAACTTTGATCCTAAGATTGCTACTTTTTGGATTGATTCTGGTAAATTAAAAGGGGTTCTTCTTGAAAGCGGAAGCCCGGAGGAATTTGAACTCCTTCCTAAACTTGCAAGATTCCAACCTTCTGTTGATAAAGCTAAACTTCAAAGTGCGTCTTCAGTCGAGGAAGCACTGGATATTGCCCGAGCATCCCTGCAACAGGCTGGAGCTTCGGTTTGA 1527 45.06 MFPVRRLMMAAASNSVSLKHGLSLWCPHSGSFSRAQPKSSVSFRSFRRSYVVASSDFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVTKEAVAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKDKGIETFYQDPVTGIDIENQTLKTNSGKLLKYGALLIATGCTASRFPDRIGGGLPGVHYIRDVADADSLISSLEKAKKVVIVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLARKYEEFYQENGVKFLKGASIKNLEAGADGRVSSVRLEDGSSIEADTVVIGIGAKPAVSPFEQVGLNSTVGGIQVDGLFRTKIPGIFAVGDVAAFPLKIMTVIQIKQLYDRVTRVEHVDHARRSAQHCVKSLLTAHTQIYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFELLPKLARFQPSVDKAKLQSASSVEEALDIARASLQQAGASV 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 972757 979516 - Cp4.1LG13g01300.1 Cpe13g00134 479332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00134 508 Gene3D - 187 314 IPR036188 -
Cpe13g00134 508 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 12 504 - -
Cpe13g00134 508 SUPERFAMILY FAD/NAD(P)-binding domain 60 359 IPR036188 -
Cpe13g00134 508 Gene3D - 406 493 IPR016156 GO:0016491|GO:0050660
Cpe13g00134 508 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Cpe13g00134 508 PRINTS FAD-dependent pyridine nucleotide reductase signature 65 84 - -
Cpe13g00134 508 PRINTS FAD-dependent pyridine nucleotide reductase signature 332 354 - -
Cpe13g00134 508 PRINTS FAD-dependent pyridine nucleotide reductase signature 173 191 - -
Cpe13g00134 508 PRINTS FAD-dependent pyridine nucleotide reductase signature 306 322 - -
Cpe13g00134 508 PANTHER APOPTOSIS-INDUCING FACTOR 1 12 504 - -
Cpe13g00134 508 Gene3D - 65 389 IPR036188 -
Cpe13g00134 508 Pfam Pyridine nucleotide-disulphide oxidoreductase 64 385 IPR023753 GO:0016491
Cpe13g00134 508 PRINTS Pyridine nucleotide disulphide reductase class-I signature 219 244 - -
Cpe13g00134 508 PRINTS Pyridine nucleotide disulphide reductase class-I signature 347 354 - -
Cpe13g00134 508 PRINTS Pyridine nucleotide disulphide reductase class-I signature 307 321 - -
Cpe13g00134 508 PRINTS Pyridine nucleotide disulphide reductase class-I signature 63 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00134 K08232 E1.6.5.4; monodehydroascorbate reductase (NADH) [EC:1.6.5.4] - csv:101214011 899.042
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00134 Cpe-Chr13:972757 Cpe13g00895 Cpe-Chr13:7672819 5.96E-104 dispersed
Cpe13g00134 Cpe-Chr13:972757 Cpe01g00831 Cpe-Chr1:4936337 1.47E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00134 Cpe_Chr13 FPKM 24.669168 27.472727 18.933649 19.734163 34.140568 38.013283 33.026203 17.528929 17.102877 17.527948