Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00136 ATGGCTACTAAAGAGTCCAGCTCTGCGGCTGCCACTGAGGGGAAGATTAAAGGGGTTCTTACCCATGGCGGCCGATATGTTCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCTGCTAAGTATGTTCCTCCTTTGCGACCCATTGGTAGAGGTGCTTATGGTCTTGTTTGTGCTGCTGTAAATTCTGAGACACATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCTTTTGATAACATAATCGATGCCAAGAGGACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACACGAAAATATTATAGCCATCAGAGACATCATTCGGCCACCAAAAAGAGAGGTTTTTAATGATGTTTATATCGTTTACGAATTGATGGACACTGATCTTCATCAAATAATTCGTTCCGACCAATCACTGACCGACGATCATTGCCAGTACTTTTTGTATCAGTTATTGCGTGGGCTGAAGTATGTACATTCAGCCAAGGTCCTGCACCGTGATCTCAAGCCAAGCAACCTGCTTCTGAATGCAAATTGCGACCTTAAAATTGGCGATTTTGGATTAGCTAGAACGACTTCTGAAACCGACTTCATGACCGAATATGTGGTTACTCGTTGGTACCGAGCACCGGAATTGCTGCTCAATTGTTCGGAGTACACTGCTGCTATCGATGTTTGGTCTGTCGGATGCATTCTTGGTGAGATCATGACCAGAGAACCTCTCTTCCCTGGAAAAGATTATGTTCATCAACTCAGACTTATAACTGAGCTACTAGGATCACCGGATGACGCCAGCCTAGGATTTCTCCGAAGCGACAATGCTCGAAGATACGTCAAGCAGCTTCCACAGTACAGGAAACAACAATTCTCAGCTAGATTTCCCAACATGTCTCCAGCTGCTCTTGATCTTCTAGAAAAGATGCTCGTATTCGATCCAAACAAACGCATTACAGTGGAGGAGGCACTTTGTCATCCATACTTGCAATCTCTTCACGACATCAACGACGAGCCAGTCTGTGTCAGGCCCTTCAGTTTCGATTTCGAGCAACCGTCGTGCACTGAAGAGCATATTAAAGAACTCATCTGGAAAGAATCCGTCCGGTTCAACCCCGACGAATCAAGCAGAAGGACGACTCTTTGCGTCTAA 1152 44.36 MATKESSSAAATEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQSLTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSARFPNMSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCVRPFSFDFEQPSCTEEHIKELIWKESVRFNPDESSRRTTLCV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 984706 991670 + Cp4.1LG13g01390.1 Cpe13g00136 479334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00136 383 Gene3D Phosphorylase Kinase; domain 1 26 366 - -
Cpe13g00136 383 ProSiteProfiles Protein kinase domain profile. 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00136 383 ProSitePatterns MAP kinase signature. 78 181 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cpe13g00136 383 ProSitePatterns Protein kinases ATP-binding region signature. 49 73 IPR017441 GO:0005524
Cpe13g00136 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Cpe13g00136 383 SMART serkin_6 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00136 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 18 374 - -
Cpe13g00136 383 SUPERFAMILY Protein kinase-like (PK-like) 46 337 IPR011009 -
Cpe13g00136 383 Pfam Protein kinase domain 47 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00136 383 CDD STKc_TEY_MAPK 36 372 - -
Cpe13g00136 383 Gene3D Transferase(Phosphotransferase) domain 1 127 356 - -
Cpe13g00136 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 374 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00357 Cpe13g00136 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00074 Cpe-Chr7:358653 Cpe13g00136 Cpe-Chr13:984706 0 dispersed
Cpe11g00373 Cpe-Chr11:2047885 Cpe13g00136 Cpe-Chr13:984706 0 dispersed
Cpe13g00136 Cpe-Chr13:984706 Cpe20g00780 Cpe-Chr20:6989381 0 dispersed
Cpe14g00538 Cpe-Chr14:3395247 Cpe13g00136 Cpe-Chr13:984706 1.00E-139 dispersed
Cpe12g00387 Cpe-Chr12:2759463 Cpe13g00136 Cpe-Chr13:984706 0 wgd
Cpe13g00136 Cpe-Chr13:984706 Cpe05g00357 Cpe-Chr5:1990847 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62780 PF00069 Pkinase 4.30E-71 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00136 - - csv:101214254 763.451