Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00140 ATGGCTGGAGAAGACAAATCAAACGAGATGGTTGTTGGTGGATTTTATTACAATTCCAACCAGATCCAACCCGGATTTGGATCCAGCACCGAACCGGCGGAGATGTTCAATTTGCAAGTGAACAACGAGTCTGGCGGCGGCGGCGATGATGAGTTTCATCACCACTTGATGGTGGTTGGGCCTTGGGGGACGGCGGCGGCGGCTGATTCGTCGTTGAGATGTGTGTTTCCATGTGAAGCAAACGAGAGACCAAGCCATGGCCTTTCTTTGTCTCTTAGTTCCACTAATCCTTCTTCTATTGGCTTACAATCCTTTGAATTAAGAACCCAACAATCATCTTTGGCCATATTTCAGCTTCGAAACTCCAAATTCTTGGCCCCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGAAATCACCAATGATATGAACAATAGGCACCAAAACCAAGCCATTTCTTCTACCAACTCCTCTCTTCAATCGCTTGATTTCATGGAATTGCAAAAGAGAAAAACCAAGCTTTTTTCCTTGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTATTGCGAGCAAATGAAGGCGGTGGTGGCGTCGTTCGAAGCGGTGGCCGGGAATGGGGCGGCGAGGGTGTACTCGGCGTTGGCATCGAAAGCGATGTCGAAGCATTTTAGGAGCCTAAAAGATGGAATTGTGGGGCAAATTCAAGCCACAAAAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACCACAAGAGGAGAAACGCCAAGGCTTAGAGTGATTGATCAAGCCTTAAGGCAACAAAGAGCTTTCCATCAAATCAGTGTCATGGAAAGCCATCCTTGGCGCCCTCAACGTGGCCTCCCCGAGCGTTCTGTCTCGGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCATACCCTAGCGATGTGGATAAACACATTTTATCTCGCCAAACTGGTCTCTCAAGAAGCCAGGCAAGTCCCAAGACAATTCTTAGAAAACCCCACATTTTTTTTAATGATTTGATGAATTATAAGCGTTTAAACCTCATTTTTATGAAATGGGTGTCGAATTGGTTCATTAATGCGAGGGTGAGGCTGTGGAAGCCAATGGTGGAGGAGATGTATTTAGAGGAAACAAAGGAACAAGTAGAAGAAATTGATAACACCAACTTCAACAACATGAACAACAATGGCAACAACTCTTTCGACGGGATGATGGATTTCGACGACGAGATCGACGGTCAACGATCGATCCCGACGGGGGTGGAGGATCGGAAGCCGACGTCGGACCAACTCCTAAGAATAGATTCGGAAGGTCTCTCTTCGATCATCTCTAATAACTCAGAGAAGAATGATTCAAGAGCCATGAAAGCCATGCAAAACCATCAAGGGCAACACGTCCACAACAACCATAACCATACCTTTGGGCGGATTGCTACCGATGCATTCGGCATGGTGGAGCTCGACTTCTCGTCCTACAACCACGATAGCTGCGGAGTTTCCTCGTACCTCAACAACAACAATCAACATTTCAACAACGGGAGTAGTAGCAGTGTGTCGTTGACATTAGGGTTACAACAACATGCAGCAGGCGGGAAGAACGTCAGCGAAGGTGTGAGCATCGCCTTCTCACCAGTGACATCAGCCGCAACAGCGACTCAAAGCTCCATTTTCTTCACAAGAGATCATATCGAAGAATGCCAACCAGTTCAATATTCTCTTTTAGATGGAGAAACGACTCAGAATCTTCCTTATAGAAACTTGATGGGTGCTCAATTGCTTCATGATTTGGCCGGGTAA 1815 46.23 MAGEDKSNEMVVGGFYYNSNQIQPGFGSSTEPAEMFNLQVNNESGGGGDDEFHHHLMVVGPWGTAAAADSSLRCVFPCEANERPSHGLSLSLSSTNPSSIGLQSFELRTQQSSLAIFQLRNSKFLAPTQELLYEFCSLEITNDMNNRHQNQAISSTNSSLQSLDFMELQKRKTKLFSLLEEVERRYRHYCEQMKAVVASFEAVAGNGAARVYSALASKAMSKHFRSLKDGIVGQIQATKKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISVMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILSRQTGLSRSQASPKTILRKPHIFFNDLMNYKRLNLIFMKWVSNWFINARVRLWKPMVEEMYLEETKEQVEEIDNTNFNNMNNNGNNSFDGMMDFDDEIDGQRSIPTGVEDRKPTSDQLLRIDSEGLSSIISNNSEKNDSRAMKAMQNHQGQHVHNNHNHTFGRIATDAFGMVELDFSSYNHDSCGVSSYLNNNNQHFNNGSSSSVSLTLGLQQHAAGGKNVSEGVSIAFSPVTSAATATQSSIFFTRDHIEECQPVQYSLLDGETTQNLPYRNLMGAQLLHDLAG 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1007021 1010396 - Cp4.1LG13g01460.1 Cpe13g00140 479338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00140 604 CDD homeodomain 284 375 IPR001356 GO:0003677
Cpe13g00140 604 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 67 331 - -
Cpe13g00140 604 Pfam Associated with HOX 119 231 IPR006563 -
Cpe13g00140 604 SUPERFAMILY Homeodomain-like 277 329 IPR009057 -
Cpe13g00140 604 SMART prehox3 113 233 IPR006563 -
Cpe13g00140 604 Gene3D - 287 379 - -
Cpe13g00140 604 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 360 548 - -
Cpe13g00140 604 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 331 - -
Cpe13g00140 604 SMART HOX_1 284 378 IPR001356 GO:0003677
Cpe13g00140 604 Coils Coil 165 185 - -
Cpe13g00140 604 Pfam Homeobox KN domain 301 370 IPR008422 GO:0003677|GO:0006355
Cpe13g00140 604 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 360 548 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00355 Cpe13g00140 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00394 Cpe-Chr10:2311453 Cpe13g00140 Cpe-Chr13:1007021 2.19E-78 dispersed
Cpe10g00915 Cpe-Chr10:5106944 Cpe13g00140 Cpe-Chr13:1007021 3.92E-40 dispersed
Cpe13g00140 Cpe-Chr13:1007021 Cpe03g00311 Cpe-Chr3:1597464 8.66E-76 dispersed
Cpe13g00140 Cpe-Chr13:1007021 Cpe05g00355 Cpe-Chr5:1984026 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00140 - - csv:101215049 822.002