Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe13g00142 | ATGGGCTTTCCTGCAAGCTACACTGAGCTTCTTCTTCCAAAGCTCTTCATCCACGTACTCTCCGTCCTCGGCTTCCTCAGGAAGCTTATCTCCCTTCTCTTCCGCCTCCTAGGGCTTCAAGATTTTCTCGAACCGGACATTCCCTGGCCCAATCAGTCCGATTCCTTTACTACGGGACCGTTGACGGACCTTGATCCTCTCTCCGCGGCAGTTCTCCGTGAGATTCTCCCCGTCGTGAAGTTTTCGGAGCTTTTGGATCCGCCGGAGAGTTGCGCCGTGTGCCTCTACGAGTTTGAGTCTGACGACGAGATCCGCCGCCTCGCTAACTGTCGCCATATCTTCCACCGAGGATGCCTCGATCGGTGGATCGGTTATGGACAGAGGACCTGTCCGTTGTGCCGGACGGTGTTCATTCCAGGCGATTTGCGGAGCGGTGTTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCACTCCACAGCGATTCTTCTTCTTCTTCGACTCTTCTCTCTGCTGGTTTGTAG | 537 | 53.63 | MGFPASYTELLLPKLFIHVLSVLGFLRKLISLLFRLLGLQDFLEPDIPWPNQSDSFTTGPLTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFESDDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPGDLRSGVCNFDDRLWEDSEIFEALHSDSSSSSTLLSAGL | 178 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 1026585 | 1027121 | + | Cp4.1LG13g01360.1 | Cpe13g00142 | 479340 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe13g00142 | 178 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 154 | - | - | |
| Cpe13g00142 | 178 | CDD | RING-H2 | 91 | 134 | - | - | |
| Cpe13g00142 | 178 | SUPERFAMILY | RING/U-box | 72 | 139 | - | - | |
| Cpe13g00142 | 178 | PANTHER | - | 1 | 154 | - | - | |
| Cpe13g00142 | 178 | SMART | ringv_2 | 90 | 134 | IPR011016 | GO:0008270 | |
| Cpe13g00142 | 178 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
| Cpe13g00142 | 178 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| Cpe13g00142 | 178 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| Cpe13g00142 | 178 | SMART | ring_2 | 91 | 133 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g00541 | Cpe-Chr8:3529936 | Cpe13g00142 | Cpe-Chr13:1026585 | 1.48E-37 | dispersed | |
| Cpe10g00580 | Cpe-Chr10:3386256 | Cpe13g00142 | Cpe-Chr13:1026585 | 5.51E-15 | dispersed | |
| Cpe13g00142 | Cpe-Chr13:1026585 | Cpe17g00369 | Cpe-Chr17:2668461 | 2.05E-40 | dispersed | |
| Cpe12g00386 | Cpe-Chr12:2755806 | Cpe13g00142 | Cpe-Chr13:1026585 | 2.50E-40 | wgd | |
| Cpe13g00142 | Cpe-Chr13:1026585 | Cpe03g01741 | Cpe-Chr3:13187756 | 9.16E-43 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe13g00142 | K16281 | - | csv:101215533 | 291.582 |