Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00146 ATGGGAGGTTGCTGCTGCTGCTGTTCTTCGAAAGAAACAGAATCAAATATTGCACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAGCATGTTCCCCTGTCATCTCCACTTAGTGCTCCCCCAGCATTTCCAATGGGGCTTTTAGTCGATACAAATCTGGATACATCAATCCCAGACACGTATAGATCGCCTCCATTGCCTATGCCATATGATGTTGTTTTAACACATCCACATACTCCACCTGTGGCTCAAGAAATCTGCAGCAATAAGAATGACGCTGCAGCTCAGACTACCAATTCCGATACAATTCAAGAAACAACATGCATAAACACTCGGGAAACTTCAGCCAAATGTGAAGGCATCGGCGATGAGTCAGACTGCAAGAAGCATACAGATTTTGAAAATATGACGGAGAGAATCCAAAACTTACAACAAAATGCGAGCATCATTTTCATCTTGCATGCATTTTGGAATGGATGGAAAGAAGTGATATATGTCCTGTGTGCGATCAGGAAATGGTTTTTAGCCCTCCAATTGATTAGTGACAAGACATTGAAAGTAAAGTTGAAAGTATAG 579 42.14 MGGCCCCCSSKETESNIAPGYYYYPRASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIGDESDCKKHTDFENMTERIQNLQQNASIIFILHAFWNGWKEVIYVLCAIRKWFLALQLISDKTLKVKLKV 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1065851 1069602 + Cp4.1LG13g01370.1 Cpe13g00146 479344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00146 192 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 139 - -
Cpe13g00146 192 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00146 - - - cmos:111435815 262.692
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00646 Cpe13g00146 CCT
Cpe05g00349 Cpe13g00146 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00146 Cpe-Chr13:1065851 Cpe03g01738 Cpe-Chr3:13172190 9.90E-13 wgd
Cpe13g00146 Cpe-Chr13:1065851 Cpe05g00349 Cpe-Chr5:1953671 1.50E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
Vvi2g12 . . . . . Bpe07g00103 . Bma14g00607 . . Cma02g01003 Cma15g01239 . Car15g01116 . . Cpe05g00349 . . . . . . . . . . . . . . . Cone12ag0296 . . . Csa05g00265 Chy09g01243 . . . Bda07g00483 . . Bpe11g00660 . . . Cmo02g01472 Cmo15g01303 . . . . . Cpe13g00146 Bhi12g00284 . . . . . . Cla01g00249 Cam01g0254 Cec01g0246 Cco01g0260 Clacu01g0252 Cmu01g0242 Cre09g2267 Lsi09g00240 . . Cme09g01778
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004601 2 3 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00146 Cpe_Chr13 FPKM 4.460531 4.872371 6.053383 7.332047 11.604032 9.941936 12.366237 10.26543 9.346447 9.85095