Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00154 ATGGCGACGGAAGCACCCTCACAAGCTCCATCCCAAGATGATTTACAGTCCCTCTCAATCGCTGAAGCTAAGGTGCAGGAGCCGGGTTCTTCGTCAAGCTCTTCAAATCAATTGAGTTTGGAGGAGAAGTTTAAAATTGTTAGAAGTATTGGGGAAGAATGTATCCAAGAGGATGAGCTGCGGAATTTGCTCGAGAAGAAGCCGGAACCTGTGTGCTATGATGGGTTCGAACCATCTGGGAGAATGCATATTGCTCAGGGAGTGATGAAGACAATAAATGTCAACAAGCTTACTGCTTCTGGGTGCAGAGTGAAAATATGGATTGCGGACTGGTTTGCTCAACTTAACAACAAAATGGGGGGTGATCTGAAGAAAATTGAGACTGTTGGCCGCTACCTAATTGAGATATGGAAAGCAGTTGGGATGGATCTGGAAGGAGGTAAGGTTGAATTTTTGTGGTCGTCGAAGGAGATTAACTCAAGGGCGTCGGAATACTGGCCCCTTGTAATGGATATCGCTCGGAAAAACAAACTTCCAAGGATAATTAGGTGTAGCCAAATTATGGGAAGAACTGAACAAGATGAGTTGACTGCTGCCCAAATTCTCTACCCATGCATGCAATGTGCGGACATTTTTTTCCTGAAGGCTGATATCTGTCAACTGGGAATGGATCAACGGAAAGTAAATGTGCTTGCAAGAGAGTATTGTGATGACATCAAGAGGAAGAACAAGCCTATCATCCTATCGCACCATATGTTACCTGGCTTACAGCAGGGGCAGGAAAAGATGTCAAAAAAAGTGAACTTGAAGATAAAGAAAGCATATTGCCCTCCATTGATCGTGGAAGGGAATCCATGCTTAGAGTACATAAAGTATCTCATTTTCCCTTGGTTCAAGGAGTTCACTGTGGAACGAAATGCAGATCATGGTGGAAATAAAACCTTCACAACCTTCGAAGAATTAGTTGCTGACTACGCATCAGGAGTACTGCATCCAGGTGATCTTAAACCAGCATTGTCCAAGGCTTTGAATAAGATATTGGAGCCTGTACGAGATCACTTCAAAAATGATAGCAATGCCAAAGATTTATTGAAGAGGGTCAAGGCATACCGAGTCACTAGGTGA 1125 43.56 MATEAPSQAPSQDDLQSLSIAEAKVQEPGSSSSSSNQLSLEEKFKIVRSIGEECIQEDELRNLLEKKPEPVCYDGFEPSGRMHIAQGVMKTINVNKLTASGCRVKIWIADWFAQLNNKMGGDLKKIETVGRYLIEIWKAVGMDLEGGKVEFLWSSKEINSRASEYWPLVMDIARKNKLPRIIRCSQIMGRTEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKKVNLKIKKAYCPPLIVEGNPCLEYIKYLIFPWFKEFTVERNADHGGNKTFTTFEELVADYASGVLHPGDLKPALSKALNKILEPVRDHFKNDSNAKDLLKRVKAYRVTR 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1119453 1123073 - Cp4.1LG13g01570.1 Cpe13g00154 479352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00154 374 PANTHER TYROSINE-TRNA LIGASE 16 374 - -
Cpe13g00154 374 PIRSF TyrRS_arch_euk 37 373 IPR023617 GO:0004831
Cpe13g00154 374 SUPERFAMILY Nucleotidylyl transferase 45 359 - -
Cpe13g00154 374 MobiDBLite consensus disorder prediction 1 37 - -
Cpe13g00154 374 Pfam tRNA synthetases class I (W and Y) 68 348 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe13g00154 374 PANTHER TYROSINE-TRNA LIGASE 16 374 - -
Cpe13g00154 374 Gene3D HUPs 31 199 IPR014729 -
Cpe13g00154 374 Gene3D HUPs 200 372 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00154 K01866 YARS, tyrS; tyrosyl-tRNA synthetase [EC:6.1.1.1] - csv:101218148 707.983
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g319 . . . . . . . . . . . Cma15g01230 . Car15g01108 . . . . . . . . . . . . . . . . . . . Cone6ag0780 Cone9ag0785 . Csa05g00278 Chy09g01231 . Blo03g00338 . . . . . . . . . Cmo15g01294 . . . . . Cpe13g00154 Bhi12g00268 . . . . . Lcy12g1647 Cla01g00259 Cam01g0266 Cec01g0257 Cco01g0272 Clacu01g0265 Cmu01g0254 Cre09g2255 Lsi09g00254 . . Cme09g01766
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008780 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00154 Cpe_Chr13 FPKM 129.262207 133.481354 10.004535 8.137698 3.608568 2.404276 3.453611 0.0 0.115147 0.0