Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00157 ATGGGGAACCGAAGATTTGCGCAGGTTTCCACTAGCGATGAGGAAGACGAAGTACCAGTTACGAAGCAGCAACCTTCCAATTCAGACGACAACTTGTCAATTCGTAGGAAGAGGAAGAAGATGAAGCTTCTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAAGGGGACGAGAGGCATCGCAGGAGTAGAAGAAGTAGTAACAAGGGAGAGAAGGAGGTGGAAGCGTCGAAACGACAGCAGGCGGAAGATGAAGATGAGGATGATCAGTCGCAAGAGGATGCGAAGCCGATTGGGGATGCTGTTAGGGTTTCTGGGAAAGGGAGGGGACGGAAGAGCCACTACAACGCGTTTGAATATGATGGGAACAAATATGATCTTGAGGATCCGGTACTTCTAGTTCCTGAGGACAAGGATCAAAAACCTTATGTGGCAATTATTAAGGATATTACTCGGAACAAAGATGGCATGATGGTCACTGGGCAGTGGTTTTACCGTCCTGAAGAAGCTGAAAAAAAGGGTGGTGGAAGTTGGCAATCACATGATACTCGAGAGCTGTTTTATAGTTTCCACCGAGATCAGGTTCCTGCAGAATCTGTAATGCACAAATGTGTTGTGCATTTTGTTCCATTGCATAAGCAACTTCCAATTCGTAAGCAACATCCTGGATTTATTGTGCGAAAAGTGTACGACACAGTTGAAAAAAAACTTTGGAAACTAACTGATAAGGATTACGAAGACTCTAAGCAGCAGGAAATTGATGAACTTGTCAAGAAGACTATGTCACGGTTGGGAGATCTCCCTGATATTGAGCCTGAAGATGCCACACCTGATCTGGAAGATCAGTTGAAAACTAAAAGAAGTCTCAAAAGAAAAAACATTTCTCCTCTTGATGTTACAAGAGATGAATCAGAGGCAACCAGATCTGACCACAGCTTAAAAGCTGAAACTCCAGGAAGCTGTCCAACTAATCGATCAGAGTACTACTCCATATTGGAAATACACGATGTTCTAACAGGTGAGACACATCGAGATAGATGGTTGGAAAAACTTTTGGAGGGGGTTCAGTACATATGTCACTCTCCTGAGAACACACGTGAGGATGATACAGGAAAAACTGCTGCTAATGGTGTCAACCATGAAAATAAGAATCCAGAATCGTCGAGGACAGCAGAGAACAATGATAAAAGCTGTAAGTCTTTTCTCTGGCCAGATGCAGCCGTTCCGGCAATAACTGGTCTTGAGAAGGTGTCGAATGATGCTCTGTCTGCCGATTTTCAGAAGTATAACCAAAAAATGCGGCAATTGGTGTTCAATCTCAAGAATAATCGTTTACTAGCTCAACGGCTGTTAAATGGAGAGTTGGAACCGTTAAAAATCCTTAATATGTCACCCAATGAGCTTAAGGAAGGACTGACTGCTGAGGAGACAGCTGCAAATAAAGAGCCTGATGAATCTGAGCGTATGCAGGTGAAACAGATGACAGATGCTCGGTGTTCAAGATGCACAGAATGTAAAGTGGGTGTCAGGGAAATCATCCAAACAGGACATGGAGAACGATATAAGTTGGAGTGCATTGCCTGTGGTCATTCTTGGTATGCCTCTAGGGATGAACTATCCATGCTGACAATAGACGCAGCGACAAATTCTACAAAGGGTGTTGGAACTGCACCATGGGCAACTGCCAAATTCGAAGATGTGGAGAAGAGTCTACTCAGTCCTCACGAACCCGAAAAAGCTGCGGAGGACCTCTTCAAAAAGACGACTGAAGCTTACATGCCTGTATTGGATAGCCAGAAATCTAGCAAGTCTAAAAAGGAAGACAACGTAGAAACTACTAAAAATGTCCAGTAA 1854 44.17 MGNRRFAQVSTSDEEDEVPVTKQQPSNSDDNLSIRRKRKKMKLLEEEEEEEEEVEGDERHRRSRRSSNKGEKEVEASKRQQAEDEDEDDQSQEDAKPIGDAVRVSGKGRGRKSHYNAFEYDGNKYDLEDPVLLVPEDKDQKPYVAIIKDITRNKDGMMVTGQWFYRPEEAEKKGGGSWQSHDTRELFYSFHRDQVPAESVMHKCVVHFVPLHKQLPIRKQHPGFIVRKVYDTVEKKLWKLTDKDYEDSKQQEIDELVKKTMSRLGDLPDIEPEDATPDLEDQLKTKRSLKRKNISPLDVTRDESEATRSDHSLKAETPGSCPTNRSEYYSILEIHDVLTGETHRDRWLEKLLEGVQYICHSPENTREDDTGKTAANGVNHENKNPESSRTAENNDKSCKSFLWPDAAVPAITGLEKVSNDALSADFQKYNQKMRQLVFNLKNNRLLAQRLLNGELEPLKILNMSPNELKEGLTAEETAANKEPDESERMQVKQMTDARCSRCTECKVGVREIIQTGHGERYKLECIACGHSWYASRDELSMLTIDAATNSTKGVGTAPWATAKFEDVEKSLLSPHEPEKAAEDLFKKTTEAYMPVLDSQKSSKSKKEDNVETTKNVQ 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1147702 1154853 - Cp4.1LG13g01540.1 Cpe13g00157 479355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00157 617 Pfam BAH domain 124 239 IPR001025 GO:0003682
Cpe13g00157 617 Coils Coil 34 60 - -
Cpe13g00157 617 MobiDBLite consensus disorder prediction 55 85 - -
Cpe13g00157 617 CDD BAH_plant_3 105 250 - -
Cpe13g00157 617 Gene3D - 103 329 IPR043151 -
Cpe13g00157 617 MobiDBLite consensus disorder prediction 1 112 - -
Cpe13g00157 617 MobiDBLite consensus disorder prediction 277 312 - -
Cpe13g00157 617 MobiDBLite consensus disorder prediction 362 395 - -
Cpe13g00157 617 Pfam Transcription factor S-II (TFIIS), central domain 339 482 IPR003618 GO:0006351
Cpe13g00157 617 Gene3D - 332 470 IPR036575 GO:0006351
Cpe13g00157 617 MobiDBLite consensus disorder prediction 265 322 - -
Cpe13g00157 617 SMART BAH_4 123 241 IPR001025 GO:0003682
Cpe13g00157 617 MobiDBLite consensus disorder prediction 31 45 - -
Cpe13g00157 617 ProSiteProfiles TFIIS central domain profile. 343 496 IPR003618 GO:0006351
Cpe13g00157 617 MobiDBLite consensus disorder prediction 595 617 - -
Cpe13g00157 617 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 614 - -
Cpe13g00157 617 ProSiteProfiles BAH domain profile. 123 241 IPR001025 GO:0003682
Cpe13g00157 617 MobiDBLite consensus disorder prediction 600 617 - -
Cpe13g00157 617 SUPERFAMILY Elongation factor TFIIS domain 2 406 469 IPR036575 GO:0006351
Cpe13g00157 617 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 614 - -
Cpe13g00157 617 SMART mid_6 341 478 IPR003618 GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00157 - - - cmax:111468864 1196.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00334 Cpe13g00157 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00336 Cpe-Chr5:1870812 Cpe13g00157 Cpe-Chr13:1147702 0 dispersed
Cpe13g00157 Cpe-Chr13:1147702 Cpe18g00833 Cpe-Chr18:7702385 1.73E-24 dispersed
Cpe13g00157 Cpe-Chr13:1147702 Cpe05g00334 Cpe-Chr5:1858359 2.55E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006093 0 1 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 4 3 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00157 Cpe_Chr13 FPKM 89.367622 89.918526 44.472576 45.322144 130.839203 97.35849 123.823174 20.545654 23.042992 22.626968