Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00159 ATGGGGAAAGGAAGACCAAGAGCTGTGGAAAAGGGGGTTTTAGGGCAAAATTTGAGTGTATGTTCATCTGCTTCATTGAATATACCATCTGGACCTGCGTTTTATCCAACTGAAGATGAATTTAGAGACCCATTGGAGTATATATATAAGATCAGACCAGAGGCTGAGCCGTACGGGATTTGTAGGATAGTGCCTCCTAAGAACTGGAAACCTCCATTTGCATTGAGATTAGATTCTTTTACATTTCCCACAAAAACTCAGGCCATTCATCAATTGCAGGTTAGACCTGCTGCCTGTGATTCAGAGACGTTTGAGCTTGAATATAATAGGTTTTTGGATGGTCATTTTGGCAAAAAGATGAAGAAGAAGGTTGTTTTTGAGGGAGATGAGTTGGATTTGTGCAAGTTATTTAATGCAGTGAAGCGTTATGGTGGGTATGATAAGGTTGTTAAGGAGAAGAGGTGGGGTGAGGTTTTTAGGTTTGTTAGATCAACAAGGAAGATTTCAGAGTGTGCTAAGCATGTGCTTTGTCAATTGTATCGAGAACATTTATATGATTATGAGAACTATTATAATCAATTGAATAAGGATGTCACGAAGAGTTCAAAAAGGAAAATGCAAAATGAGAAGCTTACGGAGTGCTTGGCCGAAATTTCAACCTCTAAAAGGAGGCGGCAGAACACCGACGATTGTAGAGTCAAGGTCTCAAAGTTAAAAGACGAAGAAGATAACGATCAGATTTGTGAGCAATGTAAAAGTGGATTACATGGTGAAGTGATGCTTCTATGCGATAGGTGCGACAAGGGGTGGCACTTATATTGTCTCTCACCTCCTTTAAAGCAAGTTCCACCAGGGAACTGGTATTGTTTAGATTGCTTGAATTCAGAGAAGGATAGTTTTGGTTTTGTGCCTGGTAAAAGCTTCTCCCTGGAAGCATTTAAGCGTATGGATTGCAGGGCCAAGAAGAAATGGTTTGGCTCAGGGTCTGCTTCTAGGGCGCAAATTGAGAAGAAGTTTTGGGAAATTGTGGAAGGTTCATTTGGTGAGGTTGAAGTTAAATATGGCAGTGACTTGGACACATCAGTTTATGGCAGTGGCTTTCCTCGTGAAAATGTCCAGAGGCCAGAATCAATTGATGCTAAGCTGTGGGATGAATATTGCAATAGTCCTTGGAATCTCAATAACTTGCCCAAATTGGAAGGGTCCATGCTTAGAGCCATTCGTCACAATATTACTGGTGTTATGGTGCCCTGGTTGTATATTGGGATGCTATTTTCATCGTTCTGCTGGCATTTTGAAGATCATTGTTTCTATTCAATGAATTACCTGCACTGGGGTGACCCAAAATGCTGGTATAGTGTACCTGGTAGTGAAGCTACTGCTTTTGAGAAGGTTATGCGGAATAACCTTCCTGATCTTTTTGACGCACAACCTGATTTACTTTTCCAACTTGTCACCATGTTGAATCCATCCGTCTTACAAGACAATGGCGTACCTGTTTATACTGTACAGCAGGAGCCTGGAAATTTCGTTGTGACCTTCCCTAGATCTTACCATGGGGGTTTTAATCTTGGATTAAATTGTGCTGAGGCCGTAAATTTTGCTCCAGCTGACTGGATGCCTTATGGTGGGTTTGGAGAAGAACTGTATCAGCTTTATCACAAACCTGCTGTTTTTTCTCACGAGGAGCTTATCTGTGTGATAGCGAAGTACTATGGTAGAAAATTGCTTGGTTTTGTTCATGAAAACCCCCAAGGAATGCCGACTGACATCACTGAAGAGAATGACGTGGATCTTTTCCAATCATCCAAAAATGCAATTGCAATCTTAGTTTTGTGGATTCTTATTCCTTGTCTCAATGTACTCTTCATTTTGCAGATGGACTGCAACGACCGAGTTTCTCCTTACCTGAAGAAAGAGTTACTTAGGATATATTCTAAGGAGAAAAGTTGGAGAGAACAACTTTGGAAAAATGGTGTAATCAGATCTTCTCCATTGCCTCCTCGGAAGTGTCCTGAATATATCAGTACTGAGGAGGATCCAACATGCGTAATTTGTAAGAAGTACCTTTATCTTTCAGCTATAGGTTGCCATTGTAGGAGATCTGCTTTTGTATGTTTAGAGCACTGGCAACACCTTTGTGAATGCAAGTACAGCAGGCGGCGCCTTCGGTACCGTTATACACTTGCAGAACTATATGATTTGATTGCTATAGTTGATAGATCTATTTTTGGGGAGACAACTGAAAGTAAGGATTTGCGACGGGTGGGCTTATGCTTCACTGAGCGATGCACTTTGACAAAAAAGGTGAAAGGTGGTCGTGTCACTCTGACTCAACTTGCAGAAAAATGGTTACTGCATTCGAGTAAGATTCTTCAAGATCCGTTCTCAAATGAGGCATGTGTTAAGGTTATGAGAGAAGCCGAGCAATTTCTTTGGGCTGGTCATGACATGGATCACGTTCGTGATGTGGTAAGAAACTTGGACGAAACTCAAAAGTGGGTTCAAGGCATCGGGGATTCCATTTGTAAAATTGAAGCGTGGTCATGTGATCATTCTGGAAGTTTAGAGAAAATTTGCATGGATCATGTAAATAATTTGTTGAGTCTACCCCCAATATCATGTAACCATCCTGGGTACCTTAAGTTGAAGGATTATGTCGAAGAAGCAAAGATGTTGATACAAGATATTGATAATACCTTATCAAGATGCCCTAATGTAACTACTTTTGGGATCCATTGCTTGATGTCCTTTTTTAACGTGTATTTTCAAATTGTTTATAAACTCTCAATTCAGGTTTCTGAATGGGAAATTTTGTACTCGAGAGTGTGTGCCTTTCCAGTCCATATCAAAGAAAGTGAGAAGTTATCGGAAAAAATATCAATAGCGAAGTCTTGCATAGAAAGTGTCAGAGAAATTTTGGAGAAACACCCGGCTGCTTTTGAGGTTGAGGTTCTTTACAAGTTGAAGTTTAAGATTTTGGAACTAGGAATCCAGCTTCCAGAGACAGAAACGGTACTGGATTTAATAAGGCAAGCTGAACTATGTCGTTCTAAATGTGAAGAAATTATGAAGGCTCCCATGAATTTGAAGACTGTCAAACAGTTCCTTCAAGAATCAAACGGTTTTGCTGTTAATATACCTGAACTGAAGCTTTTAAGACAGTATCATGATGATGCTGTTTCATGGAAGGGTCGTCTTAATGCTATTATGGTTAATGTTCATGAACGGGAGGATCAACATAATGTAATCGAAGAATTAAATTGCATTCTAAGAGATGGATTATCACTGACAATAAAAGTTGATGATGTACCTTTAGTTGAGGTTGAGTTGAAGAAGGCTTCTGTCAGGGAAAAAGCTCAAAAGTTACGCGATACCAAGGTTACTATGGAATTCATGCAGAAACTGATGGAGGAGGCTGTTGAATTAGAACTTGATAAGGAAAAATTGTTTGCTGATATTCGTGGAGTTCTCGATTCAGCAATGAGTGTAGAGAAGAGAGCAATGGATTTTCTATCCCATGGGTCCCGGTTATCTGATTTCGAAGAGATTATAAGGACTTCTGAAGATTTATGTGTTATTCTACCTTCTCTTCATGATGTAAAGAATGAAGTATCCTTGGCCAAATCCTGGTTAAATTTTTCGAAGCCTTTCTTAGAATCTGTTCTCCCTATGTCTTCTGCACGAAGATCGCGACTGAAAATTGAAACACTAAAGGAGTTGGTTTCTCAGTCAAAACTCCTTAAGGTTACTTTGGACGAAAGCAGAATGCTTGAAACCGTACTGAGAAACTGCGAGAATTGGAAAGAGGGAGCAAACTCTTTATTGCAAGATATTGATATTCTTTTGAATGCGAGTGATATAGGAGATGGCCTGAGCAATTGTCTTATTCCTAAGATTGAACAATTAATTGATAGAATCAATACTGCTATTACAGCCAGTTTATCTCTTGATTATGACTTCCGTGAGATTTCCAGACTTCAAAGTGCTTGTTCTACACTCATCTGGTGCAATAAAGTTCTTTCTCTTTGCCATGTTATTCCTTCTTATCAGGATGTTGAGAGCTTGTTGAGTGTTGAAGAGAATAGTTCATGTTTATATGCCTCCGGTGTTATGTGGAGCTTATTGGTGGAGGGTGTCAAATGGCTGAAGCAAGCCTTAGAGGTGATTCCTGGAACGTGCAATTTTAAACAAAGAAAGTTGAGTGATGCTGAGGAATTACTTTCCAAATTTCAGAGTATCAGAATCAACTTCTCAGCCATGAATGATCAACTTGTAAATGCTATTCGGACGCACAAGTTGTGGCTGGAAGAAGTACGTCAATTTTTTGTTATTAAGCGTGCTGAACGATCGTGGACTCAGTTATTAAAACTTAAGGAAAAAGGAGATGCCGTTTCCTTCAATTGTTCTGAGCTACAATTAATTTTATCCGAAGCTGAAAAGATTGAAAAGTGGAAGAAACATATGCGGGAAATCATGAAAACATCTTTTGGGGATGAAAGTTCTTTGCTTGGTTGTCTACTAGAGATAAAGAAATCACTGGATAGATCCCTATACATATATGAGAAGTCGTTGCTCTACACTGATCAAAACTTATGTGTGTGTTGTTCTAGCGATTCACAGGATCAGCATCTTTTTACTTGCACTGTCTGTAAAGAAAGCTACCATTTGCAGTGCCTAGGACAAGCAAAAGAAAAAACAAACAGTACAGATGTCTTTATGTGCTATTATTGCTGTAGCTTAAGGGCTGTGTCCTCAATTGATAAAAGTGGAGGTCCCTTGAGATTTTTAGCAAATCGTCCTGAACTAGGAATGCTCACTAAGCTCAAATCTGATGCCTTGAACTTTTGTGTCTGGATGGAAGAGGAGGATGTATTAAAGCAACTGGTAGAGCAGGCTTTAGTCTGCAAATCTCACTTGACAGAAGTCTTGGACTTTGCCTCACGTTGTCTCGATAAAGATTTTAGTACCACCTGCAAGAGGTTAACAGTAGCTTTAAAGGCTATGGACGTTGCAGGCATTAACGATCAGGAAGGTAAGTGTGGCCTTGAGATGGAACTAGTGAGGAACTCGTGGAGATTCAGAGTCAAGGAAGCTCTTGAAGGTTCTGAAAAACCAACAATGCAACAGGTCCTGGAGCTTCTCGAAGAGGGATCGGCCATAAGCATTCCGCTTGAAGATTTCTACAGAAAGAAACTTTTAGAAGTGAAGATTGTTTGCTCGAAGTGGAGAAGTCTTGCAAGGAAGATTTCAGCTGACTGTGGGGCTCTTGAATTGGAGAAAGTTTTCGAACTGATCGTGGAGGGTGAAAATTTACCTGCATACCTCGAGAGGGAGCTCAAGTTATTGAGAAATCGAAGTATGCTTTATTGCATTTGCCGAAAGCCTAACGATCGCAGACCAATGCTTGCTTGTGATATTTGTGAAGAGTGGTATCACTTTGATTGTGTCAAGATTGAATCTACTCCGAAGATATACATCTGCCCAGCCTGCAAACCGCAAGTAGACAATAAAATGTTGATTCAGCTATCAACAGAATATGAAAGTTCAATAGGCACAAAGTTTGTGGAGCCAAAGACCCCTTCTCCTCAACGCATGAAGCAGAGATCGAAACCGAAAAAAACAAAGCGAAATTTAGTTCGAAGCGTGACGGATTGCTACAGAGAAATCAGGTGCCCAAGTGGAATAGAACGCTTATGGTGGCAAAACAGGAAGCCTTTCAGGAGAGTTACGAGAAGGAGAGCAGAGTTTGGGAGTCTCTCACCATTTTTCCTCATTGAACAATAA 5787 40.14 MGKGRPRAVEKGVLGQNLSVCSSASLNIPSGPAFYPTEDEFRDPLEYIYKIRPEAEPYGICRIVPPKNWKPPFALRLDSFTFPTKTQAIHQLQVRPAACDSETFELEYNRFLDGHFGKKMKKKVVFEGDELDLCKLFNAVKRYGGYDKVVKEKRWGEVFRFVRSTRKISECAKHVLCQLYREHLYDYENYYNQLNKDVTKSSKRKMQNEKLTECLAEISTSKRRRQNTDDCRVKVSKLKDEEDNDQICEQCKSGLHGEVMLLCDRCDKGWHLYCLSPPLKQVPPGNWYCLDCLNSEKDSFGFVPGKSFSLEAFKRMDCRAKKKWFGSGSASRAQIEKKFWEIVEGSFGEVEVKYGSDLDTSVYGSGFPRENVQRPESIDAKLWDEYCNSPWNLNNLPKLEGSMLRAIRHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGDPKCWYSVPGSEATAFEKVMRNNLPDLFDAQPDLLFQLVTMLNPSVLQDNGVPVYTVQQEPGNFVVTFPRSYHGGFNLGLNCAEAVNFAPADWMPYGGFGEELYQLYHKPAVFSHEELICVIAKYYGRKLLGFVHENPQGMPTDITEENDVDLFQSSKNAIAILVLWILIPCLNVLFILQMDCNDRVSPYLKKELLRIYSKEKSWREQLWKNGVIRSSPLPPRKCPEYISTEEDPTCVICKKYLYLSAIGCHCRRSAFVCLEHWQHLCECKYSRRRLRYRYTLAELYDLIAIVDRSIFGETTESKDLRRVGLCFTERCTLTKKVKGGRVTLTQLAEKWLLHSSKILQDPFSNEACVKVMREAEQFLWAGHDMDHVRDVVRNLDETQKWVQGIGDSICKIEAWSCDHSGSLEKICMDHVNNLLSLPPISCNHPGYLKLKDYVEEAKMLIQDIDNTLSRCPNVTTFGIHCLMSFFNVYFQIVYKLSIQVSEWEILYSRVCAFPVHIKESEKLSEKISIAKSCIESVREILEKHPAAFEVEVLYKLKFKILELGIQLPETETVLDLIRQAELCRSKCEEIMKAPMNLKTVKQFLQESNGFAVNIPELKLLRQYHDDAVSWKGRLNAIMVNVHEREDQHNVIEELNCILRDGLSLTIKVDDVPLVEVELKKASVREKAQKLRDTKVTMEFMQKLMEEAVELELDKEKLFADIRGVLDSAMSVEKRAMDFLSHGSRLSDFEEIIRTSEDLCVILPSLHDVKNEVSLAKSWLNFSKPFLESVLPMSSARRSRLKIETLKELVSQSKLLKVTLDESRMLETVLRNCENWKEGANSLLQDIDILLNASDIGDGLSNCLIPKIEQLIDRINTAITASLSLDYDFREISRLQSACSTLIWCNKVLSLCHVIPSYQDVESLLSVEENSSCLYASGVMWSLLVEGVKWLKQALEVIPGTCNFKQRKLSDAEELLSKFQSIRINFSAMNDQLVNAIRTHKLWLEEVRQFFVIKRAERSWTQLLKLKEKGDAVSFNCSELQLILSEAEKIEKWKKHMREIMKTSFGDESSLLGCLLEIKKSLDRSLYIYEKSLLYTDQNLCVCCSSDSQDQHLFTCTVCKESYHLQCLGQAKEKTNSTDVFMCYYCCSLRAVSSIDKSGGPLRFLANRPELGMLTKLKSDALNFCVWMEEEDVLKQLVEQALVCKSHLTEVLDFASRCLDKDFSTTCKRLTVALKAMDVAGINDQEGKCGLEMELVRNSWRFRVKEALEGSEKPTMQQVLELLEEGSAISIPLEDFYRKKLLEVKIVCSKWRSLARKISADCGALELEKVFELIVEGENLPAYLERELKLLRNRSMLYCICRKPNDRRPMLACDICEEWYHFDCVKIESTPKIYICPACKPQVDNKMLIQLSTEYESSIGTKFVEPKTPSPQRMKQRSKPKKTKRNLVRSVTDCYREIRCPSGIERLWWQNRKPFRRVTRRRAEFGSLSPFFLIEQ 1928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1169524 1191187 + Cp4.1LG13g01630.1 Cpe13g00159 479357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00159 1928 Gene3D Cupin 14 535 - -
Cpe13g00159 1928 SUPERFAMILY FYVE/PHD zinc finger 235 296 IPR011011 -
Cpe13g00159 1928 SMART ARID_2 95 188 - -
Cpe13g00159 1928 Pfam C5HC2 zinc finger 683 734 IPR004198 -
Cpe13g00159 1928 PANTHER LYSINE-SPECIFIC DEMETHYLASE 22 963 - -
Cpe13g00159 1928 SUPERFAMILY FYVE/PHD zinc finger 1785 1837 IPR011011 -
Cpe13g00159 1928 SMART PHD_3 247 293 IPR001965 -
Cpe13g00159 1928 SMART PHD_3 1790 1832 IPR001965 -
Cpe13g00159 1928 SMART PHD_3 1532 1579 IPR001965 -
Cpe13g00159 1928 SUPERFAMILY FYVE/PHD zinc finger 1528 1581 IPR011011 -
Cpe13g00159 1928 Coils Coil 1133 1153 - -
Cpe13g00159 1928 Gene3D - 98 210 IPR036431 GO:0003677
Cpe13g00159 1928 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Cpe13g00159 1928 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Cpe13g00159 1928 Pfam ARID/BRIGHT DNA binding domain 120 188 IPR001606 GO:0003677
Cpe13g00159 1928 MobiDBLite consensus disorder prediction 1854 1877 - -
Cpe13g00159 1928 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1783 1845 IPR013083 -
Cpe13g00159 1928 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Cpe13g00159 1928 Pfam jmjN domain 32 65 IPR003349 -
Cpe13g00159 1928 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Cpe13g00159 1928 SMART bright_3 99 193 IPR001606 GO:0003677
Cpe13g00159 1928 SUPERFAMILY Clavaminate synthase-like 341 570 - -
Cpe13g00159 1928 SMART JmjN_1 30 71 IPR003349 -
Cpe13g00159 1928 Coils Coil 1106 1126 - -
Cpe13g00159 1928 CDD PHD_SF 1533 1578 - -
Cpe13g00159 1928 CDD PHD_RSF1 248 292 - -
Cpe13g00159 1928 Pfam PHD-finger 1790 1833 IPR019787 -
Cpe13g00159 1928 Pfam PHD-finger 247 294 IPR019787 -
Cpe13g00159 1928 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 302 IPR013083 -
Cpe13g00159 1928 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1448 1586 IPR013083 -
Cpe13g00159 1928 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 22 963 - -
Cpe13g00159 1928 SUPERFAMILY ARID-like 81 199 IPR036431 GO:0003677
Cpe13g00159 1928 ProSitePatterns Zinc finger PHD-type signature. 1791 1831 IPR019786 -
Cpe13g00159 1928 Pfam PLU-1-like protein 949 1276 IPR013637 -
Cpe13g00159 1928 CDD ARID 100 188 - -
Cpe13g00159 1928 SMART cupin_9 385 551 IPR003347 -
Cpe13g00159 1928 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Cpe13g00159 1928 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00159 K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67] - csv:101216734 3244.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00897 Cpe-Chr12:7781667 Cpe13g00159 Cpe-Chr13:1169524 4.01E-09 dispersed
Cpe13g00159 Cpe-Chr13:1169524 Cpe20g00587 Cpe-Chr20:3572938 5.21E-14 dispersed
Cpe16g00078 Cpe-Chr16:1571677 Cpe13g00159 Cpe-Chr13:1169524 3.81E-10 dispersed
Cpe13g00159 Cpe-Chr13:1169524 Cpe09g00704 Cpe-Chr9:6265837 3.25E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g327 . . . . . . . Bma14g00076 . . . Cma15g01224 . Car15g01104 . . . . . . . . . . . . . . . . . Cone8ag0485 Cone12ag0310 . . . Csa05g00286 Chy09g01220 . . . . . . . . . . . Cmo15g01289 Cma06g00632 . Car06g00566 . . Cpe13g00159 Bhi12g00252 . . . . . . . . . . . . . . . . Cme09g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010126 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50381 PF08429 PLU-1 1.00E-24 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00159 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 1.822458 0.0 0.0 0.0 1.279418 2.034792