Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00161 ATGGAGAGCCCTTCTCCGGCTTCATGCTGGAGCAATGTCGTGAAATCTCAGTCGGCTCCGAAGCCTCAGCATCAGACTCCGACCTCCTCCGTCCAAGTATTCGCCGATAGCTGCAAGTCCAGTCAAGGCGTTGCTGTTGCCGTTGTTGATGCCAACGCCATTATCCAAGGAGGAGAGAAGCTTTCCACCTGCGCGGATAAGTTTGTTTCCGTTCCTGAGGTTTTGGATGAGGTTCGCGATCCTGTGTCTCGCCATAGACTCGCCTTCGTCCCCTTCTCTCTCGAATCCATGGATCCCTCTCCTGAAGCTCTCAATAAAGTAATCAAGTTTGCAAGGGCAACTGGTGACTTACAGACGCTTTCAGATGTTGATATTAAACTTATTGCCCTCACTTACACGTTGGAGACTCAGATCCATGGAACCAAACATCTCCGTGAGTGTCCTCCCCCTGTCCACATGGTTAATACAAAGAGGTTGCCTGAGAAAGACATGCCTGGGTGGGGCTCTAACGTTCCTAATCTGGAAGAATGGGAAGCATTAGAGCAAGATGCTGATGCTCCGTCCAATTCGACATCGAAGATTCTTCCTTTGCAGGATTTAAACTTGAACATCATCCCTTCAGATGGTCAATCTGAAGATCTTTCACTAGAGCCCAAGGATGGGAATTACTTGGAGCATCAAGATGAAACTGAGAGTGCATCAGGAAGATCAAGGAGGTATCCTCCAAAGAAGAAGGAAATTAATATTGAAGGGAAGAAGATGGTGGCTGATGGAATTGATGCATCTCAGGGACAATGTGATGATAATGAGGGTGAGTGGACACCTGCCGTCAGTCGAAGTACTCAGAGAAGATATATTAGGAGGAAAGCCAGACGTGAATATTATGAGTCCTTAGCTGAAAAGGATGGTCTGCAAGATGTTGAAACCACAGATGGTGACATCCAAGTGGAACCTAAGAGTTCAGGTCAATCACAGGATAAAATCTCTGAACTGCCAAATTCTGGAAATTTGAATGAGAGTCGGATAGAAGAAGGGACAAACAATAGTGAGAACCTCTCACAAATTTTGAAGCAGATGAGGCTGGAAGAAGATTCATTAAATACCCTTCATGTGGAAGGGCTTGGCGCTTCCACAAAAGAAGAATTTGATGAGAGTGAGTTGGAGGATGCTGTGGCTGTGGAAGGCTCGGATTATACAGTAAAGGATGAAATGGAACACATAGAAGACTTGAGTCAGACTAATGAAAGTGTAGACACGTCAAATGTAGATGATGTTAGCAGTGATCAGAGTTGGATGCTCAGATCATTGTCTGAATCAAGTGTAGCATGTGTAACTGGTGACTTCGCGATGCAGAATGTTCTTCTGCAAATGGGTTTACGATTGTTGGCTCCAGGAGGAATGCAGATCCGGCAACTACATAGGTGGATTTTGAAATGTCACGCCTGCTACAATGTCACAGCTGAAATTGGAAGGATCTTTTGCCCAAAGTGTGGAAATGGTGGAACTTTACGCAAGGTAGCTGTTACAGTTGGCGAGAACGGAGTTGTGTTAGCAGCTCGTAAGCCGAGGATCACTCTGCGAGGCACAAAATTTTCACTTCCTCTACCGCAAGGTGGAAGAGACGCCATTACCAAAAATCTTGTCTTACGTGAAGATCAACTCCCGCAGAAATTTCTTCATCCCAAAACAAAGAAGAAAGCTAATAAGCAGGGAGATGACTTCTATCCCGTGGATAATTTCTTCAGCCACCACAATACTGATAAGAGAGCTCCTTTGCAGCCTCCTGTAAGGCAGGCTTTAGCAGTCTTTAGTGGGAAGAGAAATCCGAACGATAACCATTACTCCCGATCTAAGCATAAATAG 1863 45.41 MESPSPASCWSNVVKSQSAPKPQHQTPTSSVQVFADSCKSSQGVAVAVVDANAIIQGGEKLSTCADKFVSVPEVLDEVRDPVSRHRLAFVPFSLESMDPSPEALNKVIKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEALEQDADAPSNSTSKILPLQDLNLNIIPSDGQSEDLSLEPKDGNYLEHQDETESASGRSRRYPPKKKEINIEGKKMVADGIDASQGQCDDNEGEWTPAVSRSTQRRYIRRKARREYYESLAEKDGLQDVETTDGDIQVEPKSSGQSQDKISELPNSGNLNESRIEEGTNNSENLSQILKQMRLEEDSLNTLHVEGLGASTKEEFDESELEDAVAVEGSDYTVKDEMEHIEDLSQTNESVDTSNVDDVSSDQSWMLRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAITKNLVLREDQLPQKFLHPKTKKKANKQGDDFYPVDNFFSHHNTDKRAPLQPPVRQALAVFSGKRNPNDNHYSRSKHK 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1212735 1217374 + Cp4.1LG13g01590.1 Cpe13g00161 479359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00161 620 CDD PIN_Nob1-like 58 145 IPR033411 -
Cpe13g00161 620 PANTHER - 3 619 - -
Cpe13g00161 620 SUPERFAMILY NOB1 zinc finger-like 469 532 IPR036283 -
Cpe13g00161 620 Gene3D - 463 538 IPR036283 -
Cpe13g00161 620 PANTHER RNA-BINDING PROTEIN NOB1 3 619 IPR039907 -
Cpe13g00161 620 MobiDBLite consensus disorder prediction 303 349 - -
Cpe13g00161 620 Coils Coil 342 362 - -
Cpe13g00161 620 MobiDBLite consensus disorder prediction 1 28 - -
Cpe13g00161 620 Gene3D - 38 153 - -
Cpe13g00161 620 MobiDBLite consensus disorder prediction 314 349 - -
Cpe13g00161 620 MobiDBLite consensus disorder prediction 213 250 - -
Cpe13g00161 620 Pfam PIN domain of ribonuclease 48 134 IPR033411 -
Cpe13g00161 620 PIRSF Nob1 25 620 IPR017117 GO:0000469|GO:0004521|GO:0042274
Cpe13g00161 620 Pfam Nin one binding (NOB1) Zn-ribbon like 469 539 IPR014881 -
Cpe13g00161 620 MobiDBLite consensus disorder prediction 206 250 - -
Cpe13g00161 620 MobiDBLite consensus disorder prediction 262 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00161 K11883 NOB1; RNA-binding protein NOB1 - csv:101221544 1091.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00323 Cpe13g00161 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00161 Cpe-Chr13:1212735 Cpe05g00323 Cpe-Chr5:1804208 1.22E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g340 . . . . . . . Bma14g00617 . . Cma02g01465 Cma15g01219 . Car15g01099 . . Cpe05g00323 . . . . . . . . . . . . . . Cone8ag0314 Cone12ag0314 . . . Csa05g00295 Chy09g01211 . Blo03g00335 . . . . Bpe11g00652 . . . Cmo02g01502 Cmo15g01284 . . . . . Cpe13g00161 Bhi12g00235 . . Lac11g2109 . . Lcy12g1665 Cla01g00276 Cam01g0286 Cec01g0279 Cco01g0292 Clacu01g0285 Cmu01g0272 Cre09g2235 . . . Cme09g01748
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006981 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00161 Cpe_Chr13 FPKM 21.580299 23.624258 26.545103 25.566677 23.593287 22.106241 21.211542 35.437767 37.624725 36.575436