Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00162 ATGAAATCGTTTGATTCTCTTGTGCTGATTCTCTGTTTAAATTTGGGGGTTCTTTTTGGGGCTTCTCATTCTGTTTCTTCTAATGAAGTGTCGGCTCTTATGGCCTTCAGGTTAGAAATATTTGAAGATCCATTTGAAGTCTTCTCCAACTGGAACAGCCTTTATGAAGATCCTTGTTTATGGTCTGGCATTTCGTGTTCTCCCAATAGAGACCATGTTACAAAGATGTTAGATATGGCTTCACTTCCATTCAAAGTTCCCAATAGTTTCTTAGAACTATCACAGGCTTATGTTTTGGCACTCTTCTTTTACAGTAACATTTCATATTCTGCCATTAAAGGATTTCTTCCACGAGATTTGGGTCAGCTCAGCTTCTTGGACGAACTGATTTTGCATGGGAATAAGCTGCTTGGTCCAGTTCCTAAGGAGTTGGGGTGCTTGAAGAACCTCAGAGTGTTGGACTTAGGGGTGAATCAACTCACTGGTCCAATTCCTTCTGAGTTTGGGCATTTAACCAATGTTGTGAAAATAAACCTACAGTCTAATGGGCTCACTGGTAAGCTGCCTCCTGAGCTGGGACATTTGAGATACCTTGAGGAACTAAGGCTGGATCGAAATAAGCTTGGAGGAGCTGTTGCTGCTGGTGACTATTCAGATCATACTGGATTGTCAAGTTTCCAAGGGAATTGCCTCAATAACAGTAACCCAAAACAACGTCCTTCATCTCAATGCGCTAAGACCAAGAGCCATCCGGGAAGCCACGAGCAGAACCATCACGAAACAACGTCGAAACCTGTCTGGCTTTTGGCCCTTGAGATAGTAACAGGAACTCTGGTGGGTTCTCTGTTCCTTGTTGCTGTTCTTACTGCAGTCCAGAAATTCAATAGAAAATCCTCCATCATACTGCCATGGAAGAAAGCTGGAAGTAGGAAGTACTACGCTCCGGTTTACATAGATCCTGAGATTTTGAAGGATGTAACGAGATTTAGTCGACAAGAACTCGAACTAGCTTGTGAAGATTTCAGCAACATAATTGGCTCATCTCAGGACAGTTTGGTATACAAGGGCACCATGAAAACCGGACCCGAGATTGCGGTTATCTCGATGAGCATGAAAGAAGAGCAATGGACAGGATACCTCGAACTCTATTTTCAGACGGAGGTAGCGGATTTGGCGCGGATCAACCACGAGAATACAGGGAAATTACTGGGTTATTGCAGAGAGAGTAGTCCATTTACGAGGATGCTGGTTTTTGATTATGCATCAAATGGCACATTATATGAGCATCTACATTTGACTGCAGATGGAGAAGCGTCTCAGTTATCGTGGACGAGACGCATGAAGATTATCTTAGGCATCGCTCGTGGACTCGAGTATCTTCATACCGAGCTCCAACCTCCATTCACCATCTCTGAGCTGAGTTCCAATGCTGTATATCTTACGGATGACTTTTCTCCAAAGCTGATAGACTTTGAAAGTTGGAAGACGATTCTTTCACGATCGGAGAAGAATTCAGGTGCTATCGGCAGCCAAGGTGCGATATGTGTTCTTCCAAACTCTCTAGAAGCAAGACATCTCGACGTGCAGGGTAACATCTATGCTTTCGGCGTCCTTCTACTTGAAATCATCAGCGGGAGGCCTCTGTACTGCAAAGTCAAAGGAAACTTGGTAGATTGGGTCAAGGACTATATTGAAATGCCAGAAGTGATGGCTTACATTGTCGATCCCGAACTGAAGCATTTTAGATACGAAGACCTCGAGGTGATCTGTGAGGTGATGAACCTCTGCATCTACCAGCAGCCGAAATCGCTATCGATGAAGGAGGTCTGCACCATGTTAGAAACTAGAATTGACACATCTGTTGCCATTGAGTTTAAGGCATCTTCTTTGGCATGGGCAGAGCTTGCACTCTCATAG 1917 44.08 MKSFDSLVLILCLNLGVLFGASHSVSSNEVSALMAFRLEIFEDPFEVFSNWNSLYEDPCLWSGISCSPNRDHVTKMLDMASLPFKVPNSFLELSQAYVLALFFYSNISYSAIKGFLPRDLGQLSFLDELILHGNKLLGPVPKELGCLKNLRVLDLGVNQLTGPIPSEFGHLTNVVKINLQSNGLTGKLPPELGHLRYLEELRLDRNKLGGAVAAGDYSDHTGLSSFQGNCLNNSNPKQRPSSQCAKTKSHPGSHEQNHHETTSKPVWLLALEIVTGTLVGSLFLVAVLTAVQKFNRKSSIILPWKKAGSRKYYAPVYIDPEILKDVTRFSRQELELACEDFSNIIGSSQDSLVYKGTMKTGPEIAVISMSMKEEQWTGYLELYFQTEVADLARINHENTGKLLGYCRESSPFTRMLVFDYASNGTLYEHLHLTADGEASQLSWTRRMKIILGIARGLEYLHTELQPPFTISELSSNAVYLTDDFSPKLIDFESWKTILSRSEKNSGAIGSQGAICVLPNSLEARHLDVQGNIYAFGVLLLEIISGRPLYCKVKGNLVDWVKDYIEMPEVMAYIVDPELKHFRYEDLEVICEVMNLCIYQQPKSLSMKEVCTMLETRIDTSVAIEFKASSLAWAELALS 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1215502 1220699 - Cp4.1LG13g01660.1 Cpe13g00162 479360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00162 638 Gene3D Phosphorylase Kinase; domain 1 318 420 - -
Cpe13g00162 638 SUPERFAMILY L domain-like 31 211 - -
Cpe13g00162 638 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Cpe13g00162 638 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 82 - -
Cpe13g00162 638 Gene3D Ribonuclease Inhibitor 25 264 IPR032675 -
Cpe13g00162 638 Gene3D Transferase(Phosphotransferase) domain 1 421 628 - -
Cpe13g00162 638 PANTHER PROTEIN MALE DISCOVERER 2 105 221 - -
Cpe13g00162 638 MobiDBLite consensus disorder prediction 228 250 - -
Cpe13g00162 638 ProSiteProfiles Protein kinase domain profile. 339 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00162 638 Pfam Leucine rich repeat 149 208 IPR001611 GO:0005515
Cpe13g00162 638 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 105 221 - -
Cpe13g00162 638 Pfam Protein tyrosine and serine/threonine kinase 342 554 IPR001245 GO:0004672|GO:0006468
Cpe13g00162 638 PANTHER PROTEIN MALE DISCOVERER 2 223 638 - -
Cpe13g00162 638 PANTHER PROTEIN MALE DISCOVERER 2 7 82 - -
Cpe13g00162 638 SUPERFAMILY Protein kinase-like (PK-like) 318 613 IPR011009 -
Cpe13g00162 638 MobiDBLite consensus disorder prediction 228 261 - -
Cpe13g00162 638 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 223 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00162 - - - csv:101221772 983.786
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe13g00162 Cpe14g00501 CCT
Cpe05g00322 Cpe13g00162 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00162 Cpe-Chr13:1215502 Cpe14g00501 Cpe-Chr14:3173175 1.60E-25 dispersed
Cpe13g00162 Cpe-Chr13:1215502 Cpe05g00322 Cpe-Chr5:1800943 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62781 PF07714 PK_Tyr_Ser-Thr 6.00E-17 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00162 Cpe_Chr13 FPKM 246.312286 276.94455 329.489166 328.852356 153.551086 141.396637 156.688461 453.836517 468.858032 484.865906