Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00169 ATGCAACTTAATCAAACTGATGTTTGGACACTTGAACTGAAACTCGACGTTACGAATGCTCGTATTTGGGCTCGAACCAACTGCAACTTCGATGCGTCGGGTCGCGGTCAATGTCAAACTGGTGACTGTGATGGCCTCCTCCAGTGTCAGGCTTACGGTACTCCCCCGAACACCCTAGCCGAGTACGCATTGAACCAATTCAATAACTTGGACTTCTTTGATATTTCTCTCGTTGATGGATTTAACGTTCCGATGGAGTTCAGCCCGACCTCTGGCGGGTGTACTCGTGGCTACAGGTGCACAGCCGACATCAACGGACAGTGCCCAAATGAGTTGAGGGCTCCCGGAGGCTGCAACAACCCTTGCACGGTGTTCGGTGGCGATCGGTACTGTTGCACTGCCCCAAACAGCAGCTGCGGGCCAACAGATTGCTCCATATTCTTCAAGAATCGGTGTCCAGATGCGTACAGTTACCCAAAAGACGATGCCACCAACACCTTTACTTGCCCGGGAGGAACCAACTATAGGATCGGTTGTTTAAGCACAAAGCTTATGAAGATCACCATTTTCTTTCTCCTTTTCTCCACGCTTTTCTGCGTCAAATATGCGGATGCAGCCACTTTTAAAGTCCGCAACAATTGCCCTTTCACCGTTTGGGCGGCCGCTGTACCGGGCGGCGGACGAAGGCTCAACCGTAATGAGGTATGGACATTCTGGGTTAACCCCGGCACTGCGGCCGCTCGCATTTGGGCTCGAACCAACTGCAACTTTGACCAGTCTGGCAACGGACGATGTCAAACTGGGGACTGTGGTGGTCGCCTCCAATGCCAAGGCTACGGCGCTCCGCCCAACACCCTAGCTGAATACGCATTGAACCAATGGAACAACTTGGACTTCTTTGATATCTCGCTTGTCGATGGGTTTAACGTTCCAATGGAGTTCAGTCCCACTTCTGGTCGGTGCAGGGGCATCAGCTGTCGGTTTGACATCAACGCACAGTGCCCGAACGAGCTGAGGGCTCCGGGAGGCTGTAACAACCCGTGCACTGTCTTCAAGAGCGACCGGTATTGCTGCAACTCCGGCAACTGTGGAGCCACCTGGTACTCGCGATTTTTCAAAGACAGGTGCCCCAGCGCTTACAGTTACCCCAACGACAATCCAACCAGCACCTTCACTTGCCCCGGCGGAACCAACTATAGGGTTGTTTTCTGCCCTTAA 1218 52.96 MQLNQTDVWTLELKLDVTNARIWARTNCNFDASGRGQCQTGDCDGLLQCQAYGTPPNTLAEYALNQFNNLDFFDISLVDGFNVPMEFSPTSGGCTRGYRCTADINGQCPNELRAPGGCNNPCTVFGGDRYCCTAPNSSCGPTDCSIFFKNRCPDAYSYPKDDATNTFTCPGGTNYRIGCLSTKLMKITIFFLLFSTLFCVKYADAATFKVRNNCPFTVWAAAVPGGGRRLNRNEVWTFWVNPGTAAARIWARTNCNFDQSGNGRCQTGDCGGRLQCQGYGAPPNTLAEYALNQWNNLDFFDISLVDGFNVPMEFSPTSGRCRGISCRFDINAQCPNELRAPGGCNNPCTVFKSDRYCCNSGNCGATWYSRFFKDRCPSAYSYPNDNPTSTFTCPGGTNYRVVFCP 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1344053 1351764 - Cp4.1LG13g01750.1 Cpe13g00169 479367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00169 405 ProSiteProfiles Thaumatin family profile. 1 177 IPR001938 -
Cpe13g00169 405 SUPERFAMILY Osmotin, thaumatin-like protein 205 405 IPR037176 -
Cpe13g00169 405 SMART tha2 2 180 IPR001938 -
Cpe13g00169 405 SMART tha2 208 405 IPR001938 -
Cpe13g00169 405 PANTHER THAUMATIN-LIKE PROTEIN 185 405 - -
Cpe13g00169 405 PANTHER THAUMATIN-LIKE PROTEIN 2 177 - -
Cpe13g00169 405 PRINTS Pathogenesis-related protein signature 207 219 IPR001938 -
Cpe13g00169 405 PRINTS Pathogenesis-related protein signature 298 314 IPR001938 -
Cpe13g00169 405 PRINTS Pathogenesis-related protein signature 248 259 IPR001938 -
Cpe13g00169 405 PRINTS Pathogenesis-related protein signature 395 404 IPR001938 -
Cpe13g00169 405 PRINTS Pathogenesis-related protein signature 226 235 IPR001938 -
Cpe13g00169 405 PRINTS Pathogenesis-related protein signature 261 290 IPR001938 -
Cpe13g00169 405 PANTHER OS03G0233200 PROTEIN 2 177 IPR001938 -
Cpe13g00169 405 CDD TLP-P 208 405 - -
Cpe13g00169 405 ProSitePatterns Thaumatin family signature. 34 49 IPR017949 -
Cpe13g00169 405 Pfam Thaumatin family 212 405 IPR001938 -
Cpe13g00169 405 Pfam Thaumatin family 2 177 IPR001938 -
Cpe13g00169 405 Gene3D Thaumatin 1 179 IPR037176 -
Cpe13g00169 405 PANTHER OS03G0233200 PROTEIN 185 405 IPR001938 -
Cpe13g00169 405 ProSitePatterns Thaumatin family signature. 261 276 IPR017949 -
Cpe13g00169 405 ProSiteProfiles Thaumatin family profile. 205 405 IPR001938 -
Cpe13g00169 405 Gene3D Thaumatin 205 405 IPR037176 -
Cpe13g00169 405 SUPERFAMILY Osmotin, thaumatin-like protein 2 177 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00169 - - - pper:18776964 633.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00169 Cpe-Chr13:1344053 Cpe19g00864 Cpe-Chr19:6375834 4.89E-34 dispersed
Cpe13g00169 Cpe-Chr13:1344053 Cpe13g00170 Cpe-Chr13:1354057 2.52E-08 tandem
Cpe13g00169 Cpe-Chr13:1344053 Cpe08g00790 Cpe-Chr8:6268652 3.01E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g388 . . . . . . . . . . . Cma15g01207 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00314 . . . . . . . Bpe11g00682 . . . . Cmo15g01272 . . . . . Cpe13g00169 . . . . . . . Cla01g00291 Cam01g0302 Cec01g0294 Cco01g0309 Clacu01g0302 Cmu01g0287 Cre09g2220 Lsi09g00294 . . Cme09g01729
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00169 Cpe_Chr13 FPKM 18.254477 19.595709 35.164532 38.200146 10.614049 9.228699 11.405316 66.939407 68.489853 72.082329