Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00176 ATGTCTTGTTCTGGTTCTGTACTTTCCGACCAGCCAAAGATTCCGACCAATGCTACTACTTCGCTTAATGCTCCTCTGATCTCCGAAACAGAGAGATTTCCAAATCTGTGTGTTGTTCTGACAGAGCTCAAATGCATAGCCGACATCGCACTTCCGATGATTCTTGTCGGCTTTTTGATGTACTCTCGTTCGATGATCTCCATGTTGTTTCTCGGCCGATTGGGTGGTTTGTCCTTGGCTGGTGGTTCGCTTGCGATTGGGTTTGCTAATATTACTGGCTACTCTGTTCTCTCTGGCCTCGCCGTCGGCATGGAGCCCATTTGCGGCCAAGCTTTTGGGGCTAAAAAATTCAAACTTTTGGGCCTTGCCCTTCAAAGAACAGTCATTCTTCTCCTCTTTTCGTCAATACCCATTTCTTTTTTGTGGTTTAACATGAAGAAAATCCTCCTCCTTTGTGGCCAAAACGATGATATTTCCAGTGAAGCTCATTCCTACATACTCTGTTCTGTCCCTGATTTAATTGCTCTGTCTTTTCTCCACCCTTTACGGATTTATCTTCGTAGTCAATCGATTAACCTCCCTCTCACATACTGCGCTGGATTAGCCATTATATTTCATATCCCAATCAATTATCTTCTCGTCTCTGTTTTCGATTTGGGAATTTACGGCGTCGCTTTGGGAGCTGTGTGGACCAATTTCAACCTTGTCGGATTACTGATTTTATTCATTGTACTCTCCGGCGTGTACGAGAAAACCTGGCCGGGAATGTCGTCGGAGTGTTTGAAGGAATGGAAATCGCTACTTGAATTGGCGATTCCGAGCTGTATTTCGGTGTGTTTAGAATGGTGGTGGTATGAAATCATGATTTTGCTAAGTGGGTTCATGATGAATCCTCAATCAACAGTGGCTTCCATGGGGATTTTGATACAAACCACTGCTTTGATCTACATTTTCCCTTCGTCATTAAGCTTTGGAGTATCAACCAGAGTGGGAAACGAATTGGGTGCAAATCGTCCAAACAAAGCCAAATTAGCAGCCATTGTTGGGCTCTGTACAAGCTTCTTCCTTGGGTTATCAGCTTTGTCGTTTGCTTTCAATGTCCGGAAAGTATGGGCGAAAATGTTCACAAATGACACAGGAATCATCGAATTGACATGTCTGGTTCTCCCAATCATCGGACTCTGCGAGCTGGGGAACTGCCCACAGACGACAAGCTGTGGAGTATTGAGGGGCACCGCGCGGCCAAAATTGGGGGCGAACATAAATTTGGGATGTTTTTACATGGTGGGCATGCCAATTGCTATATGGCTGAGCTTTTACGGCGGGTGGGACTTCAAAGGGCTGTGGATTGGGCTGTTGGCGGCGCAAGTGTCTTGTGCCATAGCGATGCTGATGGCTCTGGTTCGGACCAATTGGGAAGAACAGGCCGAGAGGGCTAAGGAGCTGACTGGAAGTGGGTCGGACGATGATGATGAAAAAACAGAGCTTTTGAATGCGTAG 1500 46.13 MSCSGSVLSDQPKIPTNATTSLNAPLISETERFPNLCVVLTELKCIADIALPMILVGFLMYSRSMISMLFLGRLGGLSLAGGSLAIGFANITGYSVLSGLAVGMEPICGQAFGAKKFKLLGLALQRTVILLLFSSIPISFLWFNMKKILLLCGQNDDISSEAHSYILCSVPDLIALSFLHPLRIYLRSQSINLPLTYCAGLAIIFHIPINYLLVSVFDLGIYGVALGAVWTNFNLVGLLILFIVLSGVYEKTWPGMSSECLKEWKSLLELAIPSCISVCLEWWWYEIMILLSGFMMNPQSTVASMGILIQTTALIYIFPSSLSFGVSTRVGNELGANRPNKAKLAAIVGLCTSFFLGLSALSFAFNVRKVWAKMFTNDTGIIELTCLVLPIIGLCELGNCPQTTSCGVLRGTARPKLGANINLGCFYMVGMPIAIWLSFYGGWDFKGLWIGLLAAQVSCAIAMLMALVRTNWEEQAERAKELTGSGSDDDDEKTELLNA 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1382965 1384464 - Cp4.1LG13g01730.1 Cpe13g00176 479374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00176 499 Pfam MatE 273 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe13g00176 499 Pfam MatE 52 212 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe13g00176 499 PANTHER PROTEIN DETOXIFICATION 29 488 - -
Cpe13g00176 499 CDD MATE_eukaryotic 42 478 IPR045069 GO:0042910|GO:1990961
Cpe13g00176 499 MobiDBLite consensus disorder prediction 478 499 - -
Cpe13g00176 499 PANTHER MULTIDRUG RESISTANCE PROTEIN 29 488 - -
Cpe13g00176 499 TIGRFAM matE: MATE efflux family protein 52 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00176 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101219094 772.311
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00307 Cpe13g00176 CCT
Cpe13g00176 Cpe14g00126 CCT
Cpe05g00307 Cpe13g00176 ECH
Cpe13g00176 Cpe14g00126 ECH
Cpe09g00110 Cpe13g00176 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00921 Cpe-Chr2:7419892 Cpe13g00176 Cpe-Chr13:1382965 5.18E-157 dispersed
Cpe05g00277 Cpe-Chr5:1551633 Cpe13g00176 Cpe-Chr13:1382965 2.93E-96 dispersed
Cpe17g00034 Cpe-Chr17:226961 Cpe13g00176 Cpe-Chr13:1382965 4.82E-149 dispersed
Cpe11g00497 Cpe-Chr11:2903394 Cpe13g00176 Cpe-Chr13:1382965 0 transposed
Cpe13g00176 Cpe-Chr13:1382965 Cpe14g00126 Cpe-Chr14:683464 0 wgd
Cpe13g00176 Cpe-Chr13:1382965 Cpe05g00307 Cpe-Chr5:1719551 0 wgd
Cpe13g00176 Cpe-Chr13:1382965 Cpe09g00110 Cpe-Chr9:640061 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g400 . . . . . . . . . . Cma02g01482 Cma15g01199 Car02g01242 Car15g01086 . . Cpe05g00307 . . . . . . . . . . . . . . Cone8ag0330 . Cone6ag0749 Cone9ag0752 . Csa05g00322 . . Blo03g00373 . . . . Bpe11g00685 . . . Cmo02g01521 Cmo15g01264 . . . . . Cpe13g00176 Bhi12g00205 . . Lac11g2136 Hepe06g1582 . Lcy12g1700 Cla01g00299 Cam01g0311 Cec01g0302 Cco01g0318 Clacu01g0311 Cmu01g0296 Cre09g2212 Lsi09g00305 . . Cme09g01720
Vvi16g598 . . Bda05g00053 . Bpe03g00129 Bpe07g00952 Bma10g01194 Bma14g02065 Cmo16g00156 Cmo18g01242 . Cma15g01199 . Car15g01086 Sed01g3956 . Cpe14g00126 Bhi01g01362 Tan01g0293 Cmetu09g0649 Lac11g2136 Hepe07g0187 Mch10g0183 . Cla01g00299 Cam01g0311 Cec01g0302 Cco01g0318 Clacu01g0311 Cmu01g0296 Cre09g2212 . Cone5ag0843 . Cone15ag0117 Lsi05g01262 Csa05g00322 . Cme06g00965 Blo07g00425 Blo09g00089 Bda06g00665 . . . . . . . Cmo15g01264 . . Car16g00129 Car18g01127 Cpe09g00110 Cpe13g00176 Bhi12g00548 . . . . . . Cla05g00850 Cam05g0936 Cec05g0940 Cco05g0942 Clacu05g0923 Cmu05g0882 Cre05g0967 . Csa03g01680 Chy06g00914 Cme09g01720
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001123 3 2 4 5 4 2 4 2 2 1 2 2 2 2 2 4 2 7 4 2 2 2 2 1 2 2 2 4 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00176 Cpe_Chr04 FPKM 278.660248 330.373322 117.229179 104.44313 549.819092 614.437927 548.450684 187.034073 214.428406 196.083984
Cpe13g00176 Cpe_Chr13 FPKM 143.604675 179.926682 63.872574 73.015282 333.845734 350.549896 309.088684 58.344044 63.738674 57.280518
Cpe13g00176 Cpe_Chr20 FPKM 16.30661 17.422949 7.943356 8.066326 35.445538 41.253254 34.562782 7.572043 7.676743 7.109838
Cpe13g00176 Cpe_Chr20 FPKM 89.615387 94.781883 41.923771 38.278149 218.944931 265.219055 200.099121 30.120686 31.053259 28.475536