Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00177 ATGGGCACTCGTAGTAATATTGAAGATACGAAGATTATTACGGTTGAGGATTGTAGTAATACGACGTTGTTGAAAACGGAGGAGTTTGTGGATGAAGAAGAGATTTTTGGTATGCCGAGTTTGTTGGCTGATATGGCTGAGGGGATGATGGTGTCGCCGCCGAGAATAAACTCGCCGCCACCGTCCGATGACTCGATCGAGAATTCAGATGGAACGGAAAGCTTATGGAGCTACTTAGGAGTACGTCGGAGGAATAACGACAAATGGGTTTGTGAGATGAGGGAGCCGAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCGACGGCTGAAATGGCGGCGCGTGCACACGATGTGGCTGCACTCGCGTTGAGAGGGAAGTCGGCTTGTCTCAATTTTGCTGACTCGGCGTGGCGGTTTCCAATTCCGGCTAGTGATGACCCGTCTGTGATCCGTGCGGCAGCAGCGATGGCGGCGAATGAATGCAAGGATGAGGAATGTAATGCGTGTCGGGAAGAGGACGACGTCGTTTTGTGTCAACCCACGGCCAGTCCTGACCGGCCGGTTTATGTCGACGATGAAGCTTTGTCGAATATGCCTATGTTGCTTGCCAACATGGCGGAAGGACTTCTTCTTTCTCCTCCGTCTTTTTGGGTAAATGATGACGTGGAGTGGGATGATGTGGCCATGAGTCATGACGTGTCATTGTGGAACTTTTAG 720 50.83 MGTRSNIEDTKIITVEDCSNTTLLKTEEFVDEEEIFGMPSLLADMAEGMMVSPPRINSPPPSDDSIENSDGTESLWSYLGVRRRNNDKWVCEMREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPASDDPSVIRAAAAMAANECKDEECNACREEDDVVLCQPTASPDRPVYVDDEALSNMPMLLANMAEGLLLSPPSFWVNDDVEWDDVAMSHDVSLWNF 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1392367 1400162 + Cp4.1LG13g01840.1 Cpe13g00177 479375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00177 239 Gene3D AP2/ERF domain 77 135 IPR036955 GO:0003700|GO:0006355
Cpe13g00177 239 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Cpe13g00177 239 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 78 IPR045277 GO:0003700
Cpe13g00177 239 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 78 239 IPR045277 GO:0003700
Cpe13g00177 239 Pfam AP2 domain 79 126 IPR001471 GO:0003700|GO:0006355
Cpe13g00177 239 SUPERFAMILY DNA-binding domain 78 136 IPR016177 GO:0003677
Cpe13g00177 239 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Cpe13g00177 239 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Cpe13g00177 239 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Cpe13g00177 239 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Cpe13g00177 239 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 14 78 - -
Cpe13g00177 239 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 78 239 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00306 Cpe13g00177 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00676 Cpe-Chr5:4119634 Cpe13g00177 Cpe-Chr13:1392367 8.62E-42 dispersed
Cpe13g00177 Cpe-Chr13:1392367 Cpe07g01027 Cpe-Chr7:9274513 2.41E-25 dispersed
Cpe13g00177 Cpe-Chr13:1392367 Cpe14g00129 Cpe-Chr14:693943 9.34E-07 wgd
Cpe13g00177 Cpe-Chr13:1392367 Cpe14g00828 Cpe-Chr14:6704885 6.53E-13 wgd
Cpe13g00177 Cpe-Chr13:1392367 Cpe05g00305 Cpe-Chr5:1712001 2.48E-84 wgd
Cpe13g00177 Cpe-Chr13:1392367 Cpe09g00113 Cpe-Chr9:658358 2.48E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50383 PF00847 AP2 1.20E-12 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00177 - - bhj:120092445 285.034