Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00179 ATGAAAAACGAAGATCAAGCGAGGTCCCTGTTTGGGATTTCGCTCACTGATCGACCCAAATGGCAGCAGTTTCTCATTTGCTCTTCTGGGTTTTTCTTTGGCTACCTTGTTAATGGCGTTTGCGAGGAATATGTGTATAATCGTCTTAAATTCAGTTATGGATGGTACTTCACATTTGTGCAAGGCTTTGTTTATCTGGCTCTCATTTATCTCCAAGGGTTCACAACCAAGCAAATGGTTAACCCATGGAAGACATATGTGAAGCTCTCAGCTGTTCTTATGGGATCTCATGGCTTAACCAAAGGATCCTTGGCTTTTCTGAATTATCCAGCACAAATTATGTTCAAATCTACCAAGGCATGTGTTCATTCAGGAAACCCTGTGCTTCCTGTTATGATAATGGGAGCCTTCATTCCTGGGTTGAGAAGGAAATACCCTCTTCATGAGTATATCTCTGCTCTTCTATTAGTGATTGGATTGATTCTCTTCACCTTAGCAGATGCACAGACTTCTCCAAATTTCAGTATATTTGGTGTTGTTATGATAAGCGGCGCTCTTGTTATGGACGCCTTTCTTGGAAATTTGCAGGAAGCCATTTTTACTATGAATCCTGATACTACACAGACTGAGATGTTGTTTTGCTCGACCGTAGTTGGCCTCCCTTTCTTAGTAGTACCGATGGTGCTAACGGGCGAGCTATTTCATGCCTGGACTTCCTGTGCTGAACACCCGTATGTCTACGGAGTCTTGGTGTTCGAAGCCATGGCGACGTTCGTTGGGCAAGTGTCGGTTTTGTCTCTAATTGCCATTTTTGGCGCTGCCACAACCGCAATGATAACAACAGCAAGAAAAGCAGTGACTCTCCTACTTTCATACCTGATATTCACCAAGCCAATGACAGAACAGCATGGGAGTGGGCTGCTGCTTATAGCCATGGGAATTGTACTGAAGATGTTGCCTGACAGTAAGTTGCCTTCAAGAACACCAAAATCAGCACACAGAGAAGAAGATGAGAAGGGAAACACACAAGATGAAGAGAAGAGGCCATTGGTTTGA 1056 43.66 MKNEDQARSLFGISLTDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLKFSYGWYFTFVQGFVYLALIYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKACVHSGNPVLPVMIMGAFIPGLRRKYPLHEYISALLLVIGLILFTLADAQTSPNFSIFGVVMISGALVMDAFLGNLQEAIFTMNPDTTQTEMLFCSTVVGLPFLVVPMVLTGELFHAWTSCAEHPYVYGVLVFEAMATFVGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPMTEQHGSGLLLIAMGIVLKMLPDSKLPSRTPKSAHREEDEKGNTQDEEKRPLV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1407799 1410292 + Cp4.1LG13g01810.1 Cpe13g00179 479377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00179 351 MobiDBLite consensus disorder prediction 323 351 - -
Cpe13g00179 351 PANTHER SOLUTE CARRIER FAMILY 35 MEMBER B 1 335 IPR013657 GO:0055085
Cpe13g00179 351 SUPERFAMILY Multidrug resistance efflux transporter EmrE 237 322 - -
Cpe13g00179 351 PANTHER UDP-GALACTOSE/UDP-GLUCOSE TRANSPORTER 2-LIKE 1 335 - -
Cpe13g00179 351 MobiDBLite consensus disorder prediction 327 351 - -
Cpe13g00179 351 Pfam UAA transporter family 23 319 IPR013657 GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00179 K15277 SLC35B3, PAPST2; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 - csv:101204857 630.172
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00505 Cpe13g00179 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00162 Cpe-Chr9:935453 Cpe13g00179 Cpe-Chr13:1407799 8.19E-16 dispersed
Cpe13g00179 Cpe-Chr13:1407799 Cpe03g01703 Cpe-Chr3:12946547 0 wgd
Cpe13g00179 Cpe-Chr13:1407799 Cpe08g00505 Cpe-Chr8:3266449 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g405 . . . . . . . Bma14g00580 Cmo06g01139 . . Cma15g01195 . Car15g01083 . . . . . . . . . . . . . . . . . Cone8ag0332 Cone12ag0329 . . . Csa05g00327 Chy09g01182 . . . Bda07g00499 . . Bpe11g00688 . . . . Cmo15g01259 Cma06g01112 . Car06g00949 . Cpe08g00505 Cpe13g00179 Bhi12g00199 . . . . . Lcy12g1706 . . . . . . . Lsi09g00313 . . Cme09g01715
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001533 3 4 2 2 2 2 3 2 1 2 1 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 6 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00179 Cpe_Chr13 FPKM 31.871929 31.58942 42.671791 44.898819 35.092499 30.829489 35.929317 20.942478 19.185772 25.890532